Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SGF29 (SAGA complex associated factor 29)

Identity

Alias_namesCCDC101
coiled-coil domain containing 101
Alias_symbol (synonym)FLJ32446
TDRD29
Other aliasSTAF36
HGNC (Hugo) SGF29
LocusID (NCBI) 112869
Atlas_Id 77742
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28553928 and ends at 28591790 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SGF29   25156
Cards
Entrez_Gene (NCBI)SGF29  112869  SAGA complex associated factor 29
AliasesCCDC101; STAF36; TDRD29
GeneCards (Weizmann)SGF29
Ensembl hg19 (Hinxton)ENSG00000176476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176476 [Gene_View]  chr16:28553928-28591790 [Contig_View]  SGF29 [Vega]
ICGC DataPortalENSG00000176476
TCGA cBioPortalSGF29
AceView (NCBI)SGF29
Genatlas (Paris)SGF29
WikiGenes112869
SOURCE (Princeton)SGF29
Genetics Home Reference (NIH)SGF29
Genomic and cartography
GoldenPath hg38 (UCSC)SGF29  -     chr16:28553928-28591790 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGF29  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSGF29 - 16p11.2 [CytoView hg19]  SGF29 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISGF29 [Mapview hg19]  SGF29 [Mapview hg38]
OMIM613374   
Gene and transcription
Genbank (Entrez)AA132314 AA132818 AK057008 BC011981
RefSeq transcript (Entrez)NM_138414
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGF29
Cluster EST : UnigeneHs.655476 [ NCBI ]
CGAP (NCI)Hs.655476
Alternative Splicing GalleryENSG00000176476
Gene ExpressionSGF29 [ NCBI-GEO ]   SGF29 [ EBI - ARRAY_EXPRESS ]   SGF29 [ SEEK ]   SGF29 [ MEM ]
Gene Expression Viewer (FireBrowse)SGF29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112869
GTEX Portal (Tissue expression)SGF29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ES7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ES7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ES7
Splice isoforms : SwissVarQ96ES7
PhosPhoSitePlusQ96ES7
Domaine pattern : Prosite (Expaxy)SGF29_C (PS51518)   
Domains : Interpro (EBI)SGF29_tudor-like_dom   
Domain families : Pfam (Sanger)DUF1325 (PF07039)   
Domain families : Pfam (NCBI)pfam07039   
Conserved Domain (NCBI)SGF29
DMDM Disease mutations112869
Blocks (Seattle)SGF29
PDB (SRS)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB (PDBSum)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB (IMB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB (RSDB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
Structural Biology KnowledgeBase3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
SCOP (Structural Classification of Proteins)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
CATH (Classification of proteins structures)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
SuperfamilyQ96ES7
Human Protein AtlasENSG00000176476
Peptide AtlasQ96ES7
HPRD13996
IPIIPI00061680   
Protein Interaction databases
DIP (DOE-UCLA)Q96ES7
IntAct (EBI)Q96ES7
FunCoupENSG00000176476
BioGRIDSGF29
STRING (EMBL)SGF29
ZODIACSGF29
Ontologies - Pathways
QuickGOQ96ES7
Ontology : AmiGOprotein binding  Ada2/Gcn5/Ada3 transcription activator complex  transcription, DNA-templated  regulation of transcription, DNA-templated  methylated histone binding  histone H3 acetylation  SAGA-type complex  establishment of protein localization to chromatin  
Ontology : EGO-EBIprotein binding  Ada2/Gcn5/Ada3 transcription activator complex  transcription, DNA-templated  regulation of transcription, DNA-templated  methylated histone binding  histone H3 acetylation  SAGA-type complex  establishment of protein localization to chromatin  
NDEx NetworkSGF29
Atlas of Cancer Signalling NetworkSGF29
Wikipedia pathwaysSGF29
Orthology - Evolution
OrthoDB112869
GeneTree (enSembl)ENSG00000176476
Phylogenetic Trees/Animal Genes : TreeFamSGF29
HOVERGENQ96ES7
HOGENOMQ96ES7
Homologs : HomoloGeneSGF29
Homology/Alignments : Family Browser (UCSC)SGF29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGF29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGF29
dbVarSGF29
ClinVarSGF29
1000_GenomesSGF29 
Exome Variant ServerSGF29
ExAC (Exome Aggregation Consortium)SGF29 (select the gene name)
Genetic variants : HAPMAP112869
Genomic Variants (DGV)SGF29 [DGVbeta]
DECIPHERSGF29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGF29 
Mutations
ICGC Data PortalSGF29 
TCGA Data PortalSGF29 
Broad Tumor PortalSGF29
OASIS PortalSGF29 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSGF29
BioMutasearch SGF29
DgiDB (Drug Gene Interaction Database)SGF29
DoCM (Curated mutations)SGF29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGF29 (select a term)
intoGenSGF29
Cancer3DSGF29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613374   
Orphanet
MedgenSGF29
Genetic Testing Registry SGF29
NextProtQ96ES7 [Medical]
TSGene112869
GENETestsSGF29
Target ValidationSGF29
Huge Navigator SGF29 [HugePedia]
snp3D : Map Gene to Disease112869
BioCentury BCIQSGF29
ClinGenSGF29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112869
Chemical/Pharm GKB GenePA144596468
Clinical trialSGF29
Miscellaneous
canSAR (ICR)SGF29 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGF29
EVEXSGF29
GoPubMedSGF29
iHOPSGF29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.