Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SGF29 (SAGA complex associated factor 29)

Identity

Alias (NCBI)CCDC101
STAF36
TDRD29
HGNC (Hugo) SGF29
HGNC Alias symbFLJ32446
TDRD29
HGNC Alias nameSAGA-associated factor 29 homolog (yeast)
HGNC Previous nameCCDC101
HGNC Previous namecoiled-coil domain containing 101
LocusID (NCBI) 112869
Atlas_Id 77742
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28553920 and ends at 28591790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SGF29   25156
Cards
Entrez_Gene (NCBI)SGF29    SAGA complex associated factor 29
AliasesCCDC101; STAF36; TDRD29
GeneCards (Weizmann)SGF29
Ensembl hg19 (Hinxton)ENSG00000176476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176476 [Gene_View]  ENSG00000176476 [Sequence]  chr16:28553920-28591790 [Contig_View]  SGF29 [Vega]
ICGC DataPortalENSG00000176476
TCGA cBioPortalSGF29
AceView (NCBI)SGF29
Genatlas (Paris)SGF29
SOURCE (Princeton)SGF29
Genetics Home Reference (NIH)SGF29
Genomic and cartography
GoldenPath hg38 (UCSC)SGF29  -     chr16:28553920-28591790 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGF29  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSGF29 - 16p11.2 [CytoView hg19]  SGF29 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000176476
Genome Data Viewer NCBISGF29 [Mapview hg19]  
OMIM613374   
Gene and transcription
Genbank (Entrez)AA132314 AA132818 AK057008 BC011981
RefSeq transcript (Entrez)NM_138414
Consensus coding sequences : CCDS (NCBI)SGF29
Gene ExpressionSGF29 [ NCBI-GEO ]   SGF29 [ EBI - ARRAY_EXPRESS ]   SGF29 [ SEEK ]   SGF29 [ MEM ]
Gene Expression Viewer (FireBrowse)SGF29 [ Firebrowse - Broad ]
GenevisibleExpression of SGF29 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112869
GTEX Portal (Tissue expression)SGF29
Human Protein AtlasENSG00000176476-SGF29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ES7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ES7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ES7
PhosPhoSitePlusQ96ES7
Domaine pattern : Prosite (Expaxy)SGF29_C (PS51518)   
Domains : Interpro (EBI)SGF29    SGF29_tudor-like_dom   
Domain families : Pfam (Sanger)DUF1325 (PF07039)   
Domain families : Pfam (NCBI)pfam07039   
Conserved Domain (NCBI)SGF29
PDB (RSDB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB Europe3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB (PDBSum)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
PDB (IMB)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
Structural Biology KnowledgeBase3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
SCOP (Structural Classification of Proteins)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
CATH (Classification of proteins structures)3LX7    3ME9    3MEA    3MET    3MEU    3MEV    3MEW    5C0M   
SuperfamilyQ96ES7
AlphaFold pdb e-kbQ96ES7   
Human Protein Atlas [tissue]ENSG00000176476-SGF29 [tissue]
HPRD13996
Protein Interaction databases
DIP (DOE-UCLA)Q96ES7
IntAct (EBI)Q96ES7
BioGRIDSGF29
STRING (EMBL)SGF29
ZODIACSGF29
Ontologies - Pathways
QuickGOQ96ES7
Ontology : AmiGOSAGA complex  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  Ada2/Gcn5/Ada3 transcription activator complex  histone acetylation  enzyme binding  methylated histone binding  methylated histone binding  histone H3 acetylation  histone H3 acetylation  protein N-terminus binding  SAGA-type complex  establishment of protein localization to chromatin  
Ontology : EGO-EBISAGA complex  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  Ada2/Gcn5/Ada3 transcription activator complex  histone acetylation  enzyme binding  methylated histone binding  methylated histone binding  histone H3 acetylation  histone H3 acetylation  protein N-terminus binding  SAGA-type complex  establishment of protein localization to chromatin  
NDEx NetworkSGF29
Atlas of Cancer Signalling NetworkSGF29
Wikipedia pathwaysSGF29
Orthology - Evolution
OrthoDB112869
GeneTree (enSembl)ENSG00000176476
Phylogenetic Trees/Animal Genes : TreeFamSGF29
Homologs : HomoloGeneSGF29
Homology/Alignments : Family Browser (UCSC)SGF29
Gene fusions - Rearrangements
Fusion : QuiverSGF29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGF29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGF29
dbVarSGF29
ClinVarSGF29
MonarchSGF29
1000_GenomesSGF29 
Exome Variant ServerSGF29
GNOMAD BrowserENSG00000176476
Varsome BrowserSGF29
ACMGSGF29 variants
VarityQ96ES7
Genomic Variants (DGV)SGF29 [DGVbeta]
DECIPHERSGF29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGF29 
Mutations
ICGC Data PortalSGF29 
TCGA Data PortalSGF29 
Broad Tumor PortalSGF29
OASIS PortalSGF29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGF29  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSGF29
Mutations and Diseases : HGMDSGF29
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSGF29
DgiDB (Drug Gene Interaction Database)SGF29
DoCM (Curated mutations)SGF29
CIViC (Clinical Interpretations of Variants in Cancer)SGF29
Cancer3DSGF29
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613374   
Orphanet
DisGeNETSGF29
MedgenSGF29
Genetic Testing Registry SGF29
NextProtQ96ES7 [Medical]
GENETestsSGF29
Target ValidationSGF29
Huge Navigator SGF29 [HugePedia]
ClinGenSGF29
Clinical trials, drugs, therapy
MyCancerGenomeSGF29
Protein Interactions : CTDSGF29
Pharm GKB GenePA144596468
PharosQ96ES7
Clinical trialSGF29
Miscellaneous
canSAR (ICR)SGF29
HarmonizomeSGF29
DataMed IndexSGF29
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSGF29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:20:24 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.