Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SGIP1 (SH3GL interacting endocytic adaptor 1)

Identity

Alias (NCBI)-
HGNC (Hugo) SGIP1
HGNC Alias symbDKFZp761D221
LocusID (NCBI) 84251
Atlas_Id 73182
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 66534153 and ends at 66751139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELOVL5 (6p12.1) / SGIP1 (1p31.3)GSK3B (3q13.33) / SGIP1 (1p31.3)SGIP1 (1p31.3) / CPLX4 (18q21.32)
SGIP1 (1p31.3) / DLGAP1 (18p11.31)SGIP1 (1p31.3) / SEC31B (10q24.31)TAMM41 (3p25.2) / SGIP1 (1p31.3)
USP1 (1p31.3) / SGIP1 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SGIP1   25412
Cards
Entrez_Gene (NCBI)SGIP1    SH3GL interacting endocytic adaptor 1
Aliases
GeneCards (Weizmann)SGIP1
Ensembl hg19 (Hinxton)ENSG00000118473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118473 [Gene_View]  ENSG00000118473 [Sequence]  chr1:66534153-66751139 [Contig_View]  SGIP1 [Vega]
ICGC DataPortalENSG00000118473
TCGA cBioPortalSGIP1
AceView (NCBI)SGIP1
Genatlas (Paris)SGIP1
SOURCE (Princeton)SGIP1
Genetics Home Reference (NIH)SGIP1
Genomic and cartography
GoldenPath hg38 (UCSC)SGIP1  -     chr1:66534153-66751139 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGIP1  -     1p31.3   [Description]    (hg19-Feb_2009)
GoldenPathSGIP1 - 1p31.3 [CytoView hg19]  SGIP1 - 1p31.3 [CytoView hg38]
ImmunoBaseENSG00000118473
Genome Data Viewer NCBISGIP1 [Mapview hg19]  
OMIM611540   
Gene and transcription
Genbank (Entrez)AB210039 AK090697 AK125044 AK298970 AK299941
RefSeq transcript (Entrez)NM_001308203 NM_001350217 NM_001350218 NM_001376534 NM_001376535 NM_001376536 NM_001376537 NM_001376538 NM_001376539 NM_001376540 NM_001376541 NM_001376542 NM_001376543 NM_001376544 NM_001376545 NM_001376546 NM_001376547 NM_001376548 NM_001376549 NM_001376550 NM_001376551 NM_001376552 NM_001376554 NM_001376555 NM_001376556 NM_001376557 NM_032291
Consensus coding sequences : CCDS (NCBI)SGIP1
Gene ExpressionSGIP1 [ NCBI-GEO ]   SGIP1 [ EBI - ARRAY_EXPRESS ]   SGIP1 [ SEEK ]   SGIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SGIP1 [ Firebrowse - Broad ]
GenevisibleExpression of SGIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84251
GTEX Portal (Tissue expression)SGIP1
Human Protein AtlasENSG00000118473-SGIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SGIP1
Human Protein Atlas [tissue]ENSG00000118473-SGIP1 [tissue]
HPRD10910
Protein Interaction databases
BioGRIDSGIP1
STRING (EMBL)SGIP1
ZODIACSGIP1
Ontologies - Pathways
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSGIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:24 CEST 2021

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