Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SGK223 (homolog of rat pragma of Rnd2)

Identity

Other aliasPRAGMIN
HGNC (Hugo) -
LocusID (NCBI) 157285
Atlas_Id 73183
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 8175258 and ends at 8239344 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SGK223  157285  homolog of rat pragma of Rnd2
AliasesPRAGMIN
GeneCards (Weizmann)SGK223
Ensembl hg19 (Hinxton)ENSG00000275342 [Gene_View]  chr8:8175258-8239344 [Contig_View]  SGK223 [Vega]
Ensembl hg38 (Hinxton)ENSG00000275342 [Gene_View]  chr8:8175258-8239344 [Contig_View]  SGK223 [Vega]
ICGC DataPortalENSG00000275342
TCGA cBioPortalSGK223
AceView (NCBI)SGK223
Genatlas (Paris)SGK223
WikiGenes157285
SOURCE (Princeton)SGK223
Genetics Home Reference (NIH)SGK223
Genomic and cartography
GoldenPath hg19 (UCSC)SGK223  -     chr8:8175258-8239344 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SGK223  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblSGK223 - 8p23.1 [CytoView hg19]  SGK223 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBISGK223 [Mapview hg19]  SGK223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075060 AK122582 AL833872 BX420505
RefSeq transcript (Entrez)NM_001080826
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)SGK223
Cluster EST : UnigeneHs.657673 [ NCBI ]
CGAP (NCI)Hs.657673
Alternative Splicing GalleryENSG00000275342
Gene ExpressionSGK223 [ NCBI-GEO ]   SGK223 [ EBI - ARRAY_EXPRESS ]   SGK223 [ SEEK ]   SGK223 [ MEM ]
Gene Expression Viewer (FireBrowse)SGK223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157285
GTEX Portal (Tissue expression)SGK223
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YV5
Splice isoforms : SwissVarQ86YV5
Catalytic activity : Enzyme2.7.10.2 [ Enzyme-Expasy ]   2.7.10.22.7.10.2 [ IntEnz-EBI ]   2.7.10.2 [ BRENDA ]   2.7.10.2 [ KEGG ]   
PhosPhoSitePlusQ86YV5
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Ser/Thr_dual-sp_kinase    Tyr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)SGK223
DMDM Disease mutations157285
Blocks (Seattle)SGK223
SuperfamilyQ86YV5
Human Protein AtlasENSG00000275342
Peptide AtlasQ86YV5
IPIIPI00739386   
Protein Interaction databases
DIP (DOE-UCLA)Q86YV5
IntAct (EBI)Q86YV5
FunCoupENSG00000275342
BioGRIDSGK223
STRING (EMBL)SGK223
ZODIACSGK223
Ontologies - Pathways
QuickGOQ86YV5
Ontology : AmiGOnon-membrane spanning protein tyrosine kinase activity  ATP binding  peptidyl-tyrosine phosphorylation  
Ontology : EGO-EBInon-membrane spanning protein tyrosine kinase activity  ATP binding  peptidyl-tyrosine phosphorylation  
NDEx NetworkSGK223
Atlas of Cancer Signalling NetworkSGK223
Wikipedia pathwaysSGK223
Orthology - Evolution
OrthoDB157285
GeneTree (enSembl)ENSG00000275342
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ86YV5
HOGENOMQ86YV5
Homologs : HomoloGeneSGK223
Homology/Alignments : Family Browser (UCSC)SGK223
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGK223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGK223
dbVarSGK223
ClinVarSGK223
1000_GenomesSGK223 
Exome Variant ServerSGK223
ExAC (Exome Aggregation Consortium)SGK223 (select the gene name)
Genetic variants : HAPMAP157285
Genomic Variants (DGV)SGK223 [DGVbeta]
DECIPHER (Syndromes)8:8175258-8239344  ENSG00000275342
CONAN: Copy Number AnalysisSGK223 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch SGK223
DgiDB (Drug Gene Interaction Database)SGK223
DoCM (Curated mutations)SGK223 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGK223 (select a term)
intoGenSGK223
Cancer3DSGK223(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSGK223
Genetic Testing Registry SGK223
NextProtQ86YV5 [Medical]
TSGene157285
GENETestsSGK223
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease157285
BioCentury BCIQSGK223
ClinGenSGK223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157285
Clinical trialSGK223
Miscellaneous
canSAR (ICR)SGK223 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGK223
EVEXSGK223
GoPubMedSGK223
iHOPSGK223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:00 CET 2017

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