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SGO2 (shugoshin 2)

Identity

Alias (NCBI)SGOL2
TRIPIN
HGNC (Hugo) SGO2
HGNC Alias symbTRIPIN
FLJ25211
HGNC Previous nameSGOL2
HGNC Previous nameshugoshin-like 2 (S. pombe)
LocusID (NCBI) 151246
Atlas_Id 78438
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 200526207 and ends at 200584096 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SGO2   30812
Cards
Entrez_Gene (NCBI)SGO2    shugoshin 2
AliasesSGOL2; TRIPIN
GeneCards (Weizmann)SGO2
Ensembl hg19 (Hinxton)ENSG00000163535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163535 [Gene_View]  ENSG00000163535 [Sequence]  chr2:200526207-200584096 [Contig_View]  SGO2 [Vega]
ICGC DataPortalENSG00000163535
TCGA cBioPortalSGO2
AceView (NCBI)SGO2
Genatlas (Paris)SGO2
SOURCE (Princeton)SGO2
Genetics Home Reference (NIH)SGO2
Genomic and cartography
GoldenPath hg38 (UCSC)SGO2  -     chr2:200526207-200584096 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGO2  -     2q33.1   [Description]    (hg19-Feb_2009)
GoldenPathSGO2 - 2q33.1 [CytoView hg19]  SGO2 - 2q33.1 [CytoView hg38]
ImmunoBaseENSG00000163535
Genome Data Viewer NCBISGO2 [Mapview hg19]  
OMIM612425   
Gene and transcription
Genbank (Entrez)AK057940 AK095291 AK302457 AY094614 BC004567
RefSeq transcript (Entrez)NM_001160033 NM_001160046 NM_152524
Consensus coding sequences : CCDS (NCBI)SGO2
Gene ExpressionSGO2 [ NCBI-GEO ]   SGO2 [ EBI - ARRAY_EXPRESS ]   SGO2 [ SEEK ]   SGO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SGO2 [ Firebrowse - Broad ]
GenevisibleExpression of SGO2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151246
GTEX Portal (Tissue expression)SGO2
Human Protein AtlasENSG00000163535-SGO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ562F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ562F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ562F6
PhosPhoSitePlusQ562F6
Domains : Interpro (EBI)SGO2    Shugoshin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SGO2
SuperfamilyQ562F6
AlphaFold pdb e-kbQ562F6   
Human Protein Atlas [tissue]ENSG00000163535-SGO2 [tissue]
HPRD11555
Protein Interaction databases
DIP (DOE-UCLA)Q562F6
IntAct (EBI)Q562F6
BioGRIDSGO2
STRING (EMBL)SGO2
ZODIACSGO2
Ontologies - Pathways
QuickGOQ562F6
Ontology : AmiGOmitotic sister chromatid segregation  chromosome, centromeric region  kinetochore  protein binding  nucleoplasm  cytosol  mitotic spindle organization  nuclear body  mitotic cohesin complex  homologous chromosome segregation  meiotic sister chromatid cohesion  cell division  meiotic sister chromatid cohesion, centromeric  
Ontology : EGO-EBImitotic sister chromatid segregation  chromosome, centromeric region  kinetochore  protein binding  nucleoplasm  cytosol  mitotic spindle organization  nuclear body  mitotic cohesin complex  homologous chromosome segregation  meiotic sister chromatid cohesion  cell division  meiotic sister chromatid cohesion, centromeric  
NDEx NetworkSGO2
Atlas of Cancer Signalling NetworkSGO2
Wikipedia pathwaysSGO2
Orthology - Evolution
OrthoDB151246
GeneTree (enSembl)ENSG00000163535
Phylogenetic Trees/Animal Genes : TreeFamSGO2
Homologs : HomoloGeneSGO2
Homology/Alignments : Family Browser (UCSC)SGO2
Gene fusions - Rearrangements
Fusion : QuiverSGO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGO2
dbVarSGO2
ClinVarSGO2
MonarchSGO2
1000_GenomesSGO2 
Exome Variant ServerSGO2
GNOMAD BrowserENSG00000163535
Varsome BrowserSGO2
ACMGSGO2 variants
VarityQ562F6
Genomic Variants (DGV)SGO2 [DGVbeta]
DECIPHERSGO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGO2 
Mutations
ICGC Data PortalSGO2 
TCGA Data PortalSGO2 
Broad Tumor PortalSGO2
OASIS PortalSGO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGO2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSGO2
Mutations and Diseases : HGMDSGO2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSGO2
DgiDB (Drug Gene Interaction Database)SGO2
DoCM (Curated mutations)SGO2
CIViC (Clinical Interpretations of Variants in Cancer)SGO2
Cancer3DSGO2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612425   
Orphanet
DisGeNETSGO2
MedgenSGO2
Genetic Testing Registry SGO2
NextProtQ562F6 [Medical]
GENETestsSGO2
Target ValidationSGO2
Huge Navigator SGO2 [HugePedia]
ClinGenSGO2
Clinical trials, drugs, therapy
MyCancerGenomeSGO2
Protein Interactions : CTDSGO2
Pharm GKB GenePA134901462
PharosQ562F6
Clinical trialSGO2
Miscellaneous
canSAR (ICR)SGO2
HarmonizomeSGO2
DataMed IndexSGO2
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSGO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:20:25 CEST 2021

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