Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SGO2 (shugoshin 2)

Identity

Alias_namesSGOL2
shugoshin-like 2 (S. pombe)
Alias_symbol (synonym)TRIPIN
FLJ25211
Other alias
HGNC (Hugo) SGO2
LocusID (NCBI) 151246
Atlas_Id 78438
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 201390865 and ends at 201448818 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SGO2   30812
Cards
Entrez_Gene (NCBI)SGO2  151246  shugoshin 2
AliasesSGOL2; TRIPIN
GeneCards (Weizmann)SGO2
Ensembl hg19 (Hinxton)ENSG00000163535 [Gene_View]  chr2:201390865-201448818 [Contig_View]  SGO2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163535 [Gene_View]  chr2:201390865-201448818 [Contig_View]  SGO2 [Vega]
ICGC DataPortalENSG00000163535
TCGA cBioPortalSGO2
AceView (NCBI)SGO2
Genatlas (Paris)SGO2
WikiGenes151246
SOURCE (Princeton)SGO2
Genetics Home Reference (NIH)SGO2
Genomic and cartography
GoldenPath hg19 (UCSC)SGO2  -     chr2:201390865-201448818 +  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SGO2  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblSGO2 - 2q33.1 [CytoView hg19]  SGO2 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBISGO2 [Mapview hg19]  SGO2 [Mapview hg38]
OMIM612425   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001160033 NM_001160046 NM_152524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGO2
Cluster EST : UnigeneHs.655182 [ NCBI ]
CGAP (NCI)Hs.655182
Alternative Splicing GalleryENSG00000163535
Gene ExpressionSGO2 [ NCBI-GEO ]   SGO2 [ EBI - ARRAY_EXPRESS ]   SGO2 [ SEEK ]   SGO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SGO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)151246
GTEX Portal (Tissue expression)SGO2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SGO2
DMDM Disease mutations151246
Blocks (Seattle)SGO2
Human Protein AtlasENSG00000163535
HPRD11555
IPIIPI00657858   IPI00218013   IPI00395828   IPI00916907   
Protein Interaction databases
FunCoupENSG00000163535
BioGRIDSGO2
STRING (EMBL)SGO2
ZODIACSGO2
Ontologies - Pathways
Huge Navigator SGO2 [HugePedia]
snp3D : Map Gene to Disease151246
BioCentury BCIQSGO2
ClinGenSGO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151246
Chemical/Pharm GKB GenePA134901462
Clinical trialSGO2
Miscellaneous
canSAR (ICR)SGO2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGO2
EVEXSGO2
GoPubMedSGO2
iHOPSGO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:01 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.