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SGO2 (shugoshin 2)

Identity

Alias_namesSGOL2
shugoshin-like 2 (S. pombe)
Alias_symbol (synonym)TRIPIN
FLJ25211
Other alias
HGNC (Hugo) SGO2
LocusID (NCBI) 151246
Atlas_Id 78438
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 200526142 and ends at 200584095 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SGO2   30812
Cards
Entrez_Gene (NCBI)SGO2  151246  shugoshin 2
AliasesSGOL2; TRIPIN
GeneCards (Weizmann)SGO2
Ensembl hg19 (Hinxton)ENSG00000163535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163535 [Gene_View]  chr2:200526142-200584095 [Contig_View]  SGO2 [Vega]
ICGC DataPortalENSG00000163535
TCGA cBioPortalSGO2
AceView (NCBI)SGO2
Genatlas (Paris)SGO2
WikiGenes151246
SOURCE (Princeton)SGO2
Genetics Home Reference (NIH)SGO2
Genomic and cartography
GoldenPath hg38 (UCSC)SGO2  -     chr2:200526142-200584095 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGO2  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblSGO2 - 2q33.1 [CytoView hg19]  SGO2 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBISGO2 [Mapview hg19]  SGO2 [Mapview hg38]
OMIM612425   
Gene and transcription
Genbank (Entrez)AK057940 AK095291 AK302457 AM392582 AM392984
RefSeq transcript (Entrez)NM_001160033 NM_001160046 NM_152524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGO2
Cluster EST : UnigeneHs.655182 [ NCBI ]
CGAP (NCI)Hs.655182
Alternative Splicing GalleryENSG00000163535
Gene ExpressionSGO2 [ NCBI-GEO ]   SGO2 [ EBI - ARRAY_EXPRESS ]   SGO2 [ SEEK ]   SGO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SGO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151246
GTEX Portal (Tissue expression)SGO2
Human Protein AtlasENSG00000163535-SGO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ562F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ562F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ562F6
Splice isoforms : SwissVarQ562F6
PhosPhoSitePlusQ562F6
Domains : Interpro (EBI)SGO2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SGO2
DMDM Disease mutations151246
Blocks (Seattle)SGO2
SuperfamilyQ562F6
Human Protein Atlas [tissue]ENSG00000163535-SGO2 [tissue]
Peptide AtlasQ562F6
HPRD11555
IPIIPI00657858   IPI00218013   IPI00395828   IPI00916907   
Protein Interaction databases
DIP (DOE-UCLA)Q562F6
IntAct (EBI)Q562F6
FunCoupENSG00000163535
BioGRIDSGO2
STRING (EMBL)SGO2
ZODIACSGO2
Ontologies - Pathways
QuickGOQ562F6
Ontology : AmiGOchromosome, centromeric region  condensed chromosome kinetochore  protein binding  nucleoplasm  cytosol  sister chromatid cohesion  nuclear body  mitotic cohesin complex  cell division  meiotic sister chromatid cohesion, centromeric  
Ontology : EGO-EBIchromosome, centromeric region  condensed chromosome kinetochore  protein binding  nucleoplasm  cytosol  sister chromatid cohesion  nuclear body  mitotic cohesin complex  cell division  meiotic sister chromatid cohesion, centromeric  
NDEx NetworkSGO2
Atlas of Cancer Signalling NetworkSGO2
Wikipedia pathwaysSGO2
Orthology - Evolution
OrthoDB151246
GeneTree (enSembl)ENSG00000163535
Phylogenetic Trees/Animal Genes : TreeFamSGO2
HOVERGENQ562F6
HOGENOMQ562F6
Homologs : HomoloGeneSGO2
Homology/Alignments : Family Browser (UCSC)SGO2
Gene fusions - Rearrangements
Tumor Fusion PortalSGO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGO2
dbVarSGO2
ClinVarSGO2
1000_GenomesSGO2 
Exome Variant ServerSGO2
ExAC (Exome Aggregation Consortium)ENSG00000163535
GNOMAD BrowserENSG00000163535
Genetic variants : HAPMAP151246
Genomic Variants (DGV)SGO2 [DGVbeta]
DECIPHERSGO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGO2 
Mutations
ICGC Data PortalSGO2 
TCGA Data PortalSGO2 
Broad Tumor PortalSGO2
OASIS PortalSGO2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSGO2
BioMutasearch SGO2
DgiDB (Drug Gene Interaction Database)SGO2
DoCM (Curated mutations)SGO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGO2 (select a term)
intoGenSGO2
Cancer3DSGO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612425   
Orphanet
DisGeNETSGO2
MedgenSGO2
Genetic Testing Registry SGO2
NextProtQ562F6 [Medical]
TSGene151246
GENETestsSGO2
Target ValidationSGO2
Huge Navigator SGO2 [HugePedia]
snp3D : Map Gene to Disease151246
BioCentury BCIQSGO2
ClinGenSGO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151246
Chemical/Pharm GKB GenePA134901462
Clinical trialSGO2
Miscellaneous
canSAR (ICR)SGO2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGO2
EVEXSGO2
GoPubMedSGO2
iHOPSGO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:18 CET 2017

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