Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SGOL1 (shugoshin-like 1 (S. pombe))

Identity

Other namesNY-BR-85
SGO
Sgo1
HGNC (Hugo) SGOL1
LocusID (NCBI) 151648
Location 3p24.3
Location_base_pair Starts at 20209936 and ends at 20227698 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SGOL1   25088
Entrez_Gene (NCBI)SGOL1  151648  shugoshin-like 1 (S. pombe)
Cards
GeneCards (Weizmann)SGOL1
Ensembl (Hinxton)ENSG00000129810 [Gene_View]  chr3:20209936-20227698 [Contig_View]  SGOL1 [Vega]
AceView (NCBI)SGOL1
Genatlas (Paris)SGOL1
SOURCE (Stanford)NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257 NM_138484
Genomic and cartography
GoldenPath (UCSC)SGOL1  -  3p24.3   chr3:20209936-20227698 -  3p24.3   [Description]    (hg19-Feb_2009)
EnsemblSGOL1 - 3p24.3 [CytoView]
Mapping of homologs : NCBISGOL1 [Mapview]
OMIM609168   
Gene and transcription
Genbank (Entrez)AB187577 AB187578 AB187579 AB187580 AB187581
RefSeq transcript (SRS)NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257 NM_138484
RefSeq transcript (Entrez)NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257 NM_138484
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)SGOL1
Cluster EST : UnigeneHs.105153 [ SRS ] Hs.105153 [ NCBI ]
CGAP (NCI)Hs.105153
Alternative Splicing : Fast-db (Paris)GSHG0021571
Alternative Splicing GalleryENSG00000129810
Gene ExpressionSGOL1 [ NCBI-GEO ]   SGOL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FBB7 (SRS) Q5FBB7 (Uniprot)
NextProtQ5FBB7
With graphics : InterProQ5FBB7
Splice isoforms : SwissVarQ5FBB7(Swissvar)
Domains : Interpro (SRS)Shugoshin_C    Shugoshin_N   
Domains : Interpro (EBI)Shugoshin_C    Shugoshin_N   
Related proteins : CluSTrQ5FBB7
Domain families : Pfam (SRS)Shugoshin_C (PF07557)    Shugoshin_N (PF07558)   
Domain families : Pfam (Sanger)Shugoshin_C (PF07557)    Shugoshin_N (PF07558)   
Domain families : Pfam (NCBI)pfam07557    pfam07558   
DMDM151648
Blocks (Seattle)Q5FBB7
PDB (SRS)3FGA    3Q6S    4A0I   
PDB (PDBSum)3FGA    3Q6S    4A0I   
PDB (IMB)3FGA    3Q6S    4A0I   
PDB (RSDB)3FGA    3Q6S    4A0I   
Human Protein AtlasENSG00000129810
HPRD12377
IPIIPI00554824   IPI00554467   IPI00103154   IPI00554450   IPI00554496   IPI00097163   IPI00555687   IPI00926073   
Protein Interaction databases
DIP (DOE-UCLA)Q5FBB7
IntAct (EBI)Q5FBB7
FunCoupENSG00000129810
REACTOMESGOL1
Protein Interaction Database151648
BioGRIDSGOL1
InParanoidQ5FBB7
Interologous Interaction database Q5FBB7
IntegromeDBSGOL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SGOL1
SNP (GeneSNP Utah)SGOL1
SNP : HGBaseSGOL1
Genetic variants : HAPMAPSGOL1
Somatic Mutations in Cancer : COSMICSGOL1 
CONAN: Copy Number AnalysisSGOL1 
Mutations and Diseases : HGMDSGOL1
OMIM609168   
GENETests609168   
Disease Genetic AssociationSGOL1
Huge Navigator SGOL1 [HugePedia]  SGOL1 [HugeCancerGEM]
Genomic VariantsSGOL1  SGOL1 [DGVbeta]
ClinVarSGOL1
snp3D : Map Gene to Disease151648
General knowledge
Homologs : HomoloGeneSGOL1
Homology/Alignments : Family Browser (UCSC)SGOL1
Phylogenetic Trees/Animal Genes : TreeFamSGOL1
Chemical/Protein Interactions : CTD151648
Chemical/Pharm GKB GenePA134988556
Clinical trialSGOL1
Cancer Resource (Charite)ENSG00000129810
Ontology : AmiGOM phase of mitotic cell cycle  mitotic anaphase  mitotic prometaphase  mitotic cell cycle  chromosome, centromeric region  kinetochore  kinetochore  condensed chromosome kinetochore  condensed chromosome, centromeric region  condensed nuclear chromosome, centromeric region  spindle pole  protein binding  centrosome  cytosol  chromosome segregation  attachment of spindle microtubules to kinetochore  centriole-centriole cohesion  mitotic cohesin complex  meiotic chromosome segregation  cell division  
Ontology : EGO-EBIM phase of mitotic cell cycle  mitotic anaphase  mitotic prometaphase  mitotic cell cycle  chromosome, centromeric region  kinetochore  kinetochore  condensed chromosome kinetochore  condensed chromosome, centromeric region  condensed nuclear chromosome, centromeric region  spindle pole  protein binding  centrosome  cytosol  chromosome segregation  attachment of spindle microtubules to kinetochore  centriole-centriole cohesion  mitotic cohesin complex  meiotic chromosome segregation  cell division  
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
PubGeneSGOL1
iHOPSGOL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:51:04 CEST 2013
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