Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SGTB (small glutamine rich tetratricopeptide repeat containing beta)

Identity

Alias_namessmall glutamine-rich tetratricopeptide repeat (TPR)-containing
Alias_symbol (synonym)Sgt2
FLJ39002
Other aliasSGT2
HGNC (Hugo) SGTB
LocusID (NCBI) 54557
Atlas_Id 54617
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 65665928 and ends at 65722114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACACA (17q12) / SGTB (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SGTB   23567
Cards
Entrez_Gene (NCBI)SGTB  54557  small glutamine rich tetratricopeptide repeat containing beta
AliasesSGT2
GeneCards (Weizmann)SGTB
Ensembl hg19 (Hinxton)ENSG00000197860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197860 [Gene_View]  chr5:65665928-65722114 [Contig_View]  SGTB [Vega]
ICGC DataPortalENSG00000197860
TCGA cBioPortalSGTB
AceView (NCBI)SGTB
Genatlas (Paris)SGTB
WikiGenes54557
SOURCE (Princeton)SGTB
Genetics Home Reference (NIH)SGTB
Genomic and cartography
GoldenPath hg38 (UCSC)SGTB  -     chr5:65665928-65722114 -  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGTB  -     5q12.3   [Description]    (hg19-Feb_2009)
EnsemblSGTB - 5q12.3 [CytoView hg19]  SGTB - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBISGTB [Mapview hg19]  SGTB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075050 AF368281 AK090594 AK096321 AL713334
RefSeq transcript (Entrez)NM_019072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SGTB
Cluster EST : UnigeneHs.707786 [ NCBI ]
CGAP (NCI)Hs.707786
Alternative Splicing GalleryENSG00000197860
Gene ExpressionSGTB [ NCBI-GEO ]   SGTB [ EBI - ARRAY_EXPRESS ]   SGTB [ SEEK ]   SGTB [ MEM ]
Gene Expression Viewer (FireBrowse)SGTB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54557
GTEX Portal (Tissue expression)SGTB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EQ0
Splice isoforms : SwissVarQ96EQ0
PhosPhoSitePlusQ96EQ0
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)SGTA_dimer    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)SGTA_dimer (PF16546)    TPR_1 (PF00515)    TPR_11 (PF13414)   
Domain families : Pfam (NCBI)pfam16546    pfam00515    pfam13414   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)SGTB
DMDM Disease mutations54557
Blocks (Seattle)SGTB
SuperfamilyQ96EQ0
Human Protein AtlasENSG00000197860
Peptide AtlasQ96EQ0
HPRD18049
IPIIPI00061623   IPI00965053   
Protein Interaction databases
DIP (DOE-UCLA)Q96EQ0
IntAct (EBI)Q96EQ0
FunCoupENSG00000197860
BioGRIDSGTB
STRING (EMBL)SGTB
ZODIACSGTB
Ontologies - Pathways
QuickGOQ96EQ0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSGTB
Atlas of Cancer Signalling NetworkSGTB
Wikipedia pathwaysSGTB
Orthology - Evolution
OrthoDB54557
GeneTree (enSembl)ENSG00000197860
Phylogenetic Trees/Animal Genes : TreeFamSGTB
HOVERGENQ96EQ0
HOGENOMQ96EQ0
Homologs : HomoloGeneSGTB
Homology/Alignments : Family Browser (UCSC)SGTB
Gene fusions - Rearrangements
Fusion : MitelmanACACA/SGTB [17q12/5q12.3]  [t(5;17)(q12;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGTB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGTB
dbVarSGTB
ClinVarSGTB
1000_GenomesSGTB 
Exome Variant ServerSGTB
ExAC (Exome Aggregation Consortium)SGTB (select the gene name)
Genetic variants : HAPMAP54557
Genomic Variants (DGV)SGTB [DGVbeta]
DECIPHERSGTB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGTB 
Mutations
ICGC Data PortalSGTB 
TCGA Data PortalSGTB 
Broad Tumor PortalSGTB
OASIS PortalSGTB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGTB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSGTB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SGTB
DgiDB (Drug Gene Interaction Database)SGTB
DoCM (Curated mutations)SGTB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SGTB (select a term)
intoGenSGTB
Cancer3DSGTB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSGTB
Genetic Testing Registry SGTB
NextProtQ96EQ0 [Medical]
TSGene54557
GENETestsSGTB
Target ValidationSGTB
Huge Navigator SGTB [HugePedia]
snp3D : Map Gene to Disease54557
BioCentury BCIQSGTB
ClinGenSGTB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54557
Chemical/Pharm GKB GenePA134957805
Clinical trialSGTB
Miscellaneous
canSAR (ICR)SGTB (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSGTB
EVEXSGTB
GoPubMedSGTB
iHOPSGTB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:30:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.