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SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta)

Identity

Alias (NCBI)SGT2
HGNC (Hugo) SGTB
HGNC Alias symbSgt2
FLJ39002
HGNC Previous namesmall glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
 small glutamine rich tetratricopeptide repeat containing beta
LocusID (NCBI) 54557
Atlas_Id 54617
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 65665928 and ends at 65722109 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACACA (17q12) / SGTB (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SGTB   23567
Cards
Entrez_Gene (NCBI)SGTB    small glutamine rich tetratricopeptide repeat co-chaperone beta
AliasesSGT2
GeneCards (Weizmann)SGTB
Ensembl hg19 (Hinxton)ENSG00000197860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197860 [Gene_View]  ENSG00000197860 [Sequence]  chr5:65665928-65722109 [Contig_View]  SGTB [Vega]
ICGC DataPortalENSG00000197860
TCGA cBioPortalSGTB
AceView (NCBI)SGTB
Genatlas (Paris)SGTB
SOURCE (Princeton)SGTB
Genetics Home Reference (NIH)SGTB
Genomic and cartography
GoldenPath hg38 (UCSC)SGTB  -     chr5:65665928-65722109 -  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SGTB  -     5q12.3   [Description]    (hg19-Feb_2009)
GoldenPathSGTB - 5q12.3 [CytoView hg19]  SGTB - 5q12.3 [CytoView hg38]
ImmunoBaseENSG00000197860
Genome Data Viewer NCBISGTB [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF075050 AF368281 AK090594 AK096321 AL713334
RefSeq transcript (Entrez)NM_019072
Consensus coding sequences : CCDS (NCBI)SGTB
Gene ExpressionSGTB [ NCBI-GEO ]   SGTB [ EBI - ARRAY_EXPRESS ]   SGTB [ SEEK ]   SGTB [ MEM ]
Gene Expression Viewer (FireBrowse)SGTB [ Firebrowse - Broad ]
GenevisibleExpression of SGTB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54557
GTEX Portal (Tissue expression)SGTB
Human Protein AtlasENSG00000197860-SGTB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EQ0
PhosPhoSitePlusQ96EQ0
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)SGTA_dimer    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)SGTA_dimer (PF16546)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam16546    pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)SGTB
SuperfamilyQ96EQ0
AlphaFold pdb e-kbQ96EQ0   
Human Protein Atlas [tissue]ENSG00000197860-SGTB [tissue]
HPRD18049
Protein Interaction databases
DIP (DOE-UCLA)Q96EQ0
IntAct (EBI)Q96EQ0
BioGRIDSGTB
STRING (EMBL)SGTB
ZODIACSGTB
Ontologies - Pathways
QuickGOQ96EQ0
Ontology : AmiGOprotein binding  posttranslational protein targeting to endoplasmic reticulum membrane  membrane  ubiquitin-dependent ERAD pathway  molecular adaptor activity  TRC complex  positive regulation of chaperone-mediated protein folding  
Ontology : EGO-EBIprotein binding  posttranslational protein targeting to endoplasmic reticulum membrane  membrane  ubiquitin-dependent ERAD pathway  molecular adaptor activity  TRC complex  positive regulation of chaperone-mediated protein folding  
NDEx NetworkSGTB
Atlas of Cancer Signalling NetworkSGTB
Wikipedia pathwaysSGTB
Orthology - Evolution
OrthoDB54557
GeneTree (enSembl)ENSG00000197860
Phylogenetic Trees/Animal Genes : TreeFamSGTB
Homologs : HomoloGeneSGTB
Homology/Alignments : Family Browser (UCSC)SGTB
Gene fusions - Rearrangements
Fusion : MitelmanACACA/SGTB [17q12/5q12.3]  
Fusion : QuiverSGTB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSGTB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SGTB
dbVarSGTB
ClinVarSGTB
MonarchSGTB
1000_GenomesSGTB 
Exome Variant ServerSGTB
GNOMAD BrowserENSG00000197860
Varsome BrowserSGTB
ACMGSGTB variants
VarityQ96EQ0
Genomic Variants (DGV)SGTB [DGVbeta]
DECIPHERSGTB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSGTB 
Mutations
ICGC Data PortalSGTB 
TCGA Data PortalSGTB 
Broad Tumor PortalSGTB
OASIS PortalSGTB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSGTB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSGTB
Mutations and Diseases : HGMDSGTB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSGTB
DgiDB (Drug Gene Interaction Database)SGTB
DoCM (Curated mutations)SGTB
CIViC (Clinical Interpretations of Variants in Cancer)SGTB
Cancer3DSGTB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSGTB
MedgenSGTB
Genetic Testing Registry SGTB
NextProtQ96EQ0 [Medical]
GENETestsSGTB
Target ValidationSGTB
Huge Navigator SGTB [HugePedia]
ClinGenSGTB
Clinical trials, drugs, therapy
MyCancerGenomeSGTB
Protein Interactions : CTDSGTB
Pharm GKB GenePA134957805
PharosQ96EQ0
Clinical trialSGTB
Miscellaneous
canSAR (ICR)SGTB
HarmonizomeSGTB
DataMed IndexSGTB
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSGTB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:30:58 CEST 2021

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