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SH2D4B (SH2 domain containing 4B)

Identity

Other alias-
HGNC (Hugo) SH2D4B
LocusID (NCBI) 387694
Atlas_Id 73193
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 80540819 and ends at 80646560 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH2D4B   31440
Cards
Entrez_Gene (NCBI)SH2D4B  387694  SH2 domain containing 4B
Aliases
GeneCards (Weizmann)SH2D4B
Ensembl hg19 (Hinxton)ENSG00000178217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178217 [Gene_View]  chr10:80540819-80646560 [Contig_View]  SH2D4B [Vega]
ICGC DataPortalENSG00000178217
TCGA cBioPortalSH2D4B
AceView (NCBI)SH2D4B
Genatlas (Paris)SH2D4B
WikiGenes387694
SOURCE (Princeton)SH2D4B
Genetics Home Reference (NIH)SH2D4B
Genomic and cartography
GoldenPath hg38 (UCSC)SH2D4B  -     chr10:80540819-80646560 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH2D4B  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblSH2D4B - 10q23.1 [CytoView hg19]  SH2D4B - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBISH2D4B [Mapview hg19]  SH2D4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091518 AK123885 AK123978
RefSeq transcript (Entrez)NM_001145719 NM_207372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH2D4B
Cluster EST : UnigeneHs.147643 [ NCBI ]
CGAP (NCI)Hs.147643
Alternative Splicing GalleryENSG00000178217
Gene ExpressionSH2D4B [ NCBI-GEO ]   SH2D4B [ EBI - ARRAY_EXPRESS ]   SH2D4B [ SEEK ]   SH2D4B [ MEM ]
Gene Expression Viewer (FireBrowse)SH2D4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387694
GTEX Portal (Tissue expression)SH2D4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQS7
Splice isoforms : SwissVarQ5SQS7
PhosPhoSitePlusQ5SQS7
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)SH2   
Domain families : Pfam (Sanger)SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00017   
Domain families : Smart (EMBL)SH2 (SM00252)  
Conserved Domain (NCBI)SH2D4B
DMDM Disease mutations387694
Blocks (Seattle)SH2D4B
SuperfamilyQ5SQS7
Human Protein AtlasENSG00000178217
Peptide AtlasQ5SQS7
HPRD18050
IPIIPI00514668   IPI00410443   IPI00869143   IPI00645536   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQS7
IntAct (EBI)Q5SQS7
FunCoupENSG00000178217
BioGRIDSH2D4B
STRING (EMBL)SH2D4B
ZODIACSH2D4B
Ontologies - Pathways
QuickGOQ5SQS7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSH2D4B
Atlas of Cancer Signalling NetworkSH2D4B
Wikipedia pathwaysSH2D4B
Orthology - Evolution
OrthoDB387694
GeneTree (enSembl)ENSG00000178217
Phylogenetic Trees/Animal Genes : TreeFamSH2D4B
HOVERGENQ5SQS7
HOGENOMQ5SQS7
Homologs : HomoloGeneSH2D4B
Homology/Alignments : Family Browser (UCSC)SH2D4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH2D4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH2D4B
dbVarSH2D4B
ClinVarSH2D4B
1000_GenomesSH2D4B 
Exome Variant ServerSH2D4B
ExAC (Exome Aggregation Consortium)SH2D4B (select the gene name)
Genetic variants : HAPMAP387694
Genomic Variants (DGV)SH2D4B [DGVbeta]
DECIPHERSH2D4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH2D4B 
Mutations
ICGC Data PortalSH2D4B 
TCGA Data PortalSH2D4B 
Broad Tumor PortalSH2D4B
OASIS PortalSH2D4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH2D4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH2D4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SH2D4B
DgiDB (Drug Gene Interaction Database)SH2D4B
DoCM (Curated mutations)SH2D4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH2D4B (select a term)
intoGenSH2D4B
Cancer3DSH2D4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSH2D4B
Genetic Testing Registry SH2D4B
NextProtQ5SQS7 [Medical]
TSGene387694
GENETestsSH2D4B
Target ValidationSH2D4B
Huge Navigator SH2D4B [HugePedia]
snp3D : Map Gene to Disease387694
BioCentury BCIQSH2D4B
ClinGenSH2D4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387694
Chemical/Pharm GKB GenePA134943660
Clinical trialSH2D4B
Miscellaneous
canSAR (ICR)SH2D4B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH2D4B
EVEXSH2D4B
GoPubMedSH2D4B
iHOPSH2D4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:36 CEST 2017

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