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SH2D5 (SH2 domain containing 5)

Identity

Other alias-
HGNC (Hugo) SH2D5
LocusID (NCBI) 400745
Atlas_Id 73194
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 20719732 and ends at 20732640 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH2D5   28819
Cards
Entrez_Gene (NCBI)SH2D5  400745  SH2 domain containing 5
Aliases
GeneCards (Weizmann)SH2D5
Ensembl hg19 (Hinxton)ENSG00000189410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189410 [Gene_View]  chr1:20719732-20732640 [Contig_View]  SH2D5 [Vega]
ICGC DataPortalENSG00000189410
TCGA cBioPortalSH2D5
AceView (NCBI)SH2D5
Genatlas (Paris)SH2D5
WikiGenes400745
SOURCE (Princeton)SH2D5
Genetics Home Reference (NIH)SH2D5
Genomic and cartography
GoldenPath hg38 (UCSC)SH2D5  -     chr1:20719732-20732640 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH2D5  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblSH2D5 - 1p36.12 [CytoView hg19]  SH2D5 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBISH2D5 [Mapview hg19]  SH2D5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123236 AK123841 AK124869 AK296431 DC382086
RefSeq transcript (Entrez)NM_001103160 NM_001103161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH2D5
Cluster EST : UnigeneHs.591522 [ NCBI ]
CGAP (NCI)Hs.591522
Alternative Splicing GalleryENSG00000189410
Gene ExpressionSH2D5 [ NCBI-GEO ]   SH2D5 [ EBI - ARRAY_EXPRESS ]   SH2D5 [ SEEK ]   SH2D5 [ MEM ]
Gene Expression Viewer (FireBrowse)SH2D5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400745
GTEX Portal (Tissue expression)SH2D5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZV89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZV89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZV89
Splice isoforms : SwissVarQ6ZV89
PhosPhoSitePlusQ6ZV89
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)PH_dom-like    PTB/PI_dom    SH2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PTB (SM00462)  
Conserved Domain (NCBI)SH2D5
DMDM Disease mutations400745
Blocks (Seattle)SH2D5
SuperfamilyQ6ZV89
Human Protein AtlasENSG00000189410
Peptide AtlasQ6ZV89
IPIIPI00856063   IPI00973375   IPI00856002   IPI00985286   IPI00983894   IPI00976880   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZV89
IntAct (EBI)Q6ZV89
FunCoupENSG00000189410
BioGRIDSH2D5
STRING (EMBL)SH2D5
ZODIACSH2D5
Ontologies - Pathways
QuickGOQ6ZV89
Ontology : AmiGOpostsynaptic density  cell junction  postsynaptic membrane  
Ontology : EGO-EBIpostsynaptic density  cell junction  postsynaptic membrane  
NDEx NetworkSH2D5
Atlas of Cancer Signalling NetworkSH2D5
Wikipedia pathwaysSH2D5
Orthology - Evolution
OrthoDB400745
GeneTree (enSembl)ENSG00000189410
Phylogenetic Trees/Animal Genes : TreeFamSH2D5
HOVERGENQ6ZV89
HOGENOMQ6ZV89
Homologs : HomoloGeneSH2D5
Homology/Alignments : Family Browser (UCSC)SH2D5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH2D5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH2D5
dbVarSH2D5
ClinVarSH2D5
1000_GenomesSH2D5 
Exome Variant ServerSH2D5
ExAC (Exome Aggregation Consortium)SH2D5 (select the gene name)
Genetic variants : HAPMAP400745
Genomic Variants (DGV)SH2D5 [DGVbeta]
DECIPHERSH2D5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH2D5 
Mutations
ICGC Data PortalSH2D5 
TCGA Data PortalSH2D5 
Broad Tumor PortalSH2D5
OASIS PortalSH2D5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH2D5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH2D5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SH2D5
DgiDB (Drug Gene Interaction Database)SH2D5
DoCM (Curated mutations)SH2D5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH2D5 (select a term)
intoGenSH2D5
Cancer3DSH2D5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSH2D5
Genetic Testing Registry SH2D5
NextProtQ6ZV89 [Medical]
TSGene400745
GENETestsSH2D5
Target ValidationSH2D5
Huge Navigator SH2D5 [HugePedia]
snp3D : Map Gene to Disease400745
BioCentury BCIQSH2D5
ClinGenSH2D5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400745
Chemical/Pharm GKB GenePA142670927
Clinical trialSH2D5
Miscellaneous
canSAR (ICR)SH2D5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH2D5
EVEXSH2D5
GoPubMedSH2D5
iHOPSH2D5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:36 CEST 2017

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