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SH2D7 (SH2 domain containing 7)

Identity

Alias_symbol (synonym)LOC646892
Other alias-
HGNC (Hugo) SH2D7
LocusID (NCBI) 646892
Atlas_Id 73196
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78384927 and ends at 78396393 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH2D7   34549
Cards
Entrez_Gene (NCBI)SH2D7  646892  SH2 domain containing 7
Aliases
GeneCards (Weizmann)SH2D7
Ensembl hg19 (Hinxton) [Gene_View]  chr15:78384927-78396393 [Contig_View]  SH2D7 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:78384927-78396393 [Contig_View]  SH2D7 [Vega]
TCGA cBioPortalSH2D7
AceView (NCBI)SH2D7
Genatlas (Paris)SH2D7
WikiGenes646892
SOURCE (Princeton)SH2D7
Genetics Home Reference (NIH)SH2D7
Genomic and cartography
GoldenPath hg19 (UCSC)SH2D7  -     chr15:78384927-78396393 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SH2D7  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblSH2D7 - 15q25.1 [CytoView hg19]  SH2D7 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBISH2D7 [Mapview hg19]  SH2D7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001101404
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SH2D7
Cluster EST : UnigeneHs.569511 [ NCBI ]
CGAP (NCI)Hs.569511
Gene ExpressionSH2D7 [ NCBI-GEO ]   SH2D7 [ EBI - ARRAY_EXPRESS ]   SH2D7 [ SEEK ]   SH2D7 [ MEM ]
Gene Expression Viewer (FireBrowse)SH2D7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646892
GTEX Portal (Tissue expression)SH2D7
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKC9
Splice isoforms : SwissVarA6NKC9
PhosPhoSitePlusA6NKC9
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)SH2   
Domain families : Pfam (Sanger)SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00017   
Domain families : Smart (EMBL)SH2 (SM00252)  
Conserved Domain (NCBI)SH2D7
DMDM Disease mutations646892
Blocks (Seattle)SH2D7
SuperfamilyA6NKC9
Peptide AtlasA6NKC9
IPIIPI00079683   IPI00917050   
Protein Interaction databases
DIP (DOE-UCLA)A6NKC9
IntAct (EBI)A6NKC9
BioGRIDSH2D7
STRING (EMBL)SH2D7
ZODIACSH2D7
Ontologies - Pathways
QuickGOA6NKC9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSH2D7
Atlas of Cancer Signalling NetworkSH2D7
Wikipedia pathwaysSH2D7
Orthology - Evolution
OrthoDB646892
Phylogenetic Trees/Animal Genes : TreeFamSH2D7
HOVERGENA6NKC9
HOGENOMA6NKC9
Homologs : HomoloGeneSH2D7
Homology/Alignments : Family Browser (UCSC)SH2D7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH2D7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH2D7
dbVarSH2D7
ClinVarSH2D7
1000_GenomesSH2D7 
Exome Variant ServerSH2D7
ExAC (Exome Aggregation Consortium)SH2D7 (select the gene name)
Genetic variants : HAPMAP646892
Genomic Variants (DGV)SH2D7 [DGVbeta]
DECIPHER (Syndromes)15:78384927-78396393  
CONAN: Copy Number AnalysisSH2D7 
Mutations
ICGC Data PortalSH2D7 
TCGA Data PortalSH2D7 
Broad Tumor PortalSH2D7
OASIS PortalSH2D7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH2D7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH2D7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SH2D7
DgiDB (Drug Gene Interaction Database)SH2D7
DoCM (Curated mutations)SH2D7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH2D7 (select a term)
intoGenSH2D7
Cancer3DSH2D7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSH2D7
Genetic Testing Registry SH2D7
NextProtA6NKC9 [Medical]
TSGene646892
GENETestsSH2D7
Huge Navigator SH2D7 [HugePedia]
snp3D : Map Gene to Disease646892
BioCentury BCIQSH2D7
ClinGenSH2D7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646892
Chemical/Pharm GKB GenePA164725681
Clinical trialSH2D7
Miscellaneous
canSAR (ICR)SH2D7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH2D7
EVEXSH2D7
GoPubMedSH2D7
iHOPSH2D7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:03 CET 2017

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