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SH3BGR (SH3 domain binding glutamate rich protein)

Identity

Alias (NCBI)21-GARP
HGNC (Hugo) SH3BGR
HGNC Alias symb21-GARP
HGNC Alias name21-glutamic acid-rich protein
HGNC Previous nameSH3 domain binding glutamic acid-rich protein
 SH3 domain binding glutamate-rich protein
LocusID (NCBI) 6450
Atlas_Id 73197
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39451854 and ends at 39515506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOPEY2 (21q22.12) / SH3BGR (21q22.2)PLCL2 (3p24.3) / SH3BGR (21q22.2)WRB (21q22.2) / SH3BGR (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SH3BGR   10822
Cards
Entrez_Gene (NCBI)SH3BGR    SH3 domain binding glutamate rich protein
Aliases21-GARP
GeneCards (Weizmann)SH3BGR
Ensembl hg19 (Hinxton)ENSG00000185437 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185437 [Gene_View]  ENSG00000185437 [Sequence]  chr21:39451854-39515506 [Contig_View]  SH3BGR [Vega]
ICGC DataPortalENSG00000185437
TCGA cBioPortalSH3BGR
AceView (NCBI)SH3BGR
Genatlas (Paris)SH3BGR
SOURCE (Princeton)SH3BGR
Genetics Home Reference (NIH)SH3BGR
Genomic and cartography
GoldenPath hg38 (UCSC)SH3BGR  -     chr21:39451854-39515506 +  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3BGR  -     21q22.2   [Description]    (hg19-Feb_2009)
GoldenPathSH3BGR - 21q22.2 [CytoView hg19]  SH3BGR - 21q22.2 [CytoView hg38]
ImmunoBaseENSG00000185437
Genome Data Viewer NCBISH3BGR [Mapview hg19]  
OMIM602230   
Gene and transcription
Genbank (Entrez)AI338732 AW962501 BC006371 BG742101 BI819819
RefSeq transcript (Entrez)NM_001001713 NM_001317740 NM_001317741 NM_001317742 NM_007341
Consensus coding sequences : CCDS (NCBI)SH3BGR
Gene ExpressionSH3BGR [ NCBI-GEO ]   SH3BGR [ EBI - ARRAY_EXPRESS ]   SH3BGR [ SEEK ]   SH3BGR [ MEM ]
Gene Expression Viewer (FireBrowse)SH3BGR [ Firebrowse - Broad ]
GenevisibleExpression of SH3BGR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6450
GTEX Portal (Tissue expression)SH3BGR
Human Protein AtlasENSG00000185437-SH3BGR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55822   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55822  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55822
PhosPhoSitePlusP55822
Domains : Interpro (EBI)Glut_rich_SH3-bd    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)SH3BGR (PF04908)   
Domain families : Pfam (NCBI)pfam04908   
Conserved Domain (NCBI)SH3BGR
SuperfamilyP55822
AlphaFold pdb e-kbP55822   
Human Protein Atlas [tissue]ENSG00000185437-SH3BGR [tissue]
HPRD03753
Protein Interaction databases
DIP (DOE-UCLA)P55822
IntAct (EBI)P55822
BioGRIDSH3BGR
STRING (EMBL)SH3BGR
ZODIACSH3BGR
Ontologies - Pathways
QuickGOP55822
Ontology : AmiGOcytosol  SH3 domain binding  protein-containing complex assembly  
Ontology : EGO-EBIcytosol  SH3 domain binding  protein-containing complex assembly  
NDEx NetworkSH3BGR
Atlas of Cancer Signalling NetworkSH3BGR
Wikipedia pathwaysSH3BGR
Orthology - Evolution
OrthoDB6450
GeneTree (enSembl)ENSG00000185437
Phylogenetic Trees/Animal Genes : TreeFamSH3BGR
Homologs : HomoloGeneSH3BGR
Homology/Alignments : Family Browser (UCSC)SH3BGR
Gene fusions - Rearrangements
Fusion : QuiverSH3BGR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH3BGR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH3BGR
dbVarSH3BGR
ClinVarSH3BGR
MonarchSH3BGR
1000_GenomesSH3BGR 
Exome Variant ServerSH3BGR
GNOMAD BrowserENSG00000185437
Varsome BrowserSH3BGR
ACMGSH3BGR variants
VarityP55822
Genomic Variants (DGV)SH3BGR [DGVbeta]
DECIPHERSH3BGR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH3BGR 
Mutations
ICGC Data PortalSH3BGR 
TCGA Data PortalSH3BGR 
Broad Tumor PortalSH3BGR
OASIS PortalSH3BGR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH3BGR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSH3BGR
Mutations and Diseases : HGMDSH3BGR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSH3BGR
DgiDB (Drug Gene Interaction Database)SH3BGR
DoCM (Curated mutations)SH3BGR
CIViC (Clinical Interpretations of Variants in Cancer)SH3BGR
Cancer3DSH3BGR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602230   
Orphanet
DisGeNETSH3BGR
MedgenSH3BGR
Genetic Testing Registry SH3BGR
NextProtP55822 [Medical]
GENETestsSH3BGR
Target ValidationSH3BGR
Huge Navigator SH3BGR [HugePedia]
ClinGenSH3BGR
Clinical trials, drugs, therapy
MyCancerGenomeSH3BGR
Protein Interactions : CTDSH3BGR
Pharm GKB GenePA35730
PharosP55822
Clinical trialSH3BGR
Miscellaneous
canSAR (ICR)SH3BGR
HarmonizomeSH3BGR
DataMed IndexSH3BGR
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSH3BGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:26 CEST 2021

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