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SH3BGRL2 (SH3 domain binding glutamate rich protein like 2)

Identity

Alias_namesSH3 domain binding glutamic acid-rich protein like 2
Other alias-
HGNC (Hugo) SH3BGRL2
LocusID (NCBI) 83699
Atlas_Id 73199
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 79631105 and ends at 79703670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH3BGRL2   15567
Cards
Entrez_Gene (NCBI)SH3BGRL2  83699  SH3 domain binding glutamate rich protein like 2
Aliases
GeneCards (Weizmann)SH3BGRL2
Ensembl hg19 (Hinxton)ENSG00000198478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198478 [Gene_View]  ENSG00000198478 [Sequence]  chr6:79631105-79703670 [Contig_View]  SH3BGRL2 [Vega]
ICGC DataPortalENSG00000198478
TCGA cBioPortalSH3BGRL2
AceView (NCBI)SH3BGRL2
Genatlas (Paris)SH3BGRL2
WikiGenes83699
SOURCE (Princeton)SH3BGRL2
Genetics Home Reference (NIH)SH3BGRL2
Genomic and cartography
GoldenPath hg38 (UCSC)SH3BGRL2  -     chr6:79631105-79703670 +  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3BGRL2  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblSH3BGRL2 - 6q14.1 [CytoView hg19]  SH3BGRL2 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBISH3BGRL2 [Mapview hg19]  SH3BGRL2 [Mapview hg38]
OMIM615678   
Gene and transcription
Genbank (Entrez)AF131754 AF340151 AJ297972 AK074506 AK307145
RefSeq transcript (Entrez)NM_031469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH3BGRL2
Cluster EST : UnigeneHs.302772 [ NCBI ]
CGAP (NCI)Hs.302772
Alternative Splicing GalleryENSG00000198478
Gene ExpressionSH3BGRL2 [ NCBI-GEO ]   SH3BGRL2 [ EBI - ARRAY_EXPRESS ]   SH3BGRL2 [ SEEK ]   SH3BGRL2 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3BGRL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83699
GTEX Portal (Tissue expression)SH3BGRL2
Human Protein AtlasENSG00000198478-SH3BGRL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJC5
Splice isoforms : SwissVarQ9UJC5
PhosPhoSitePlusQ9UJC5
Domains : Interpro (EBI)Glut_rich_SH3-bd    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)SH3BGR (PF04908)   
Domain families : Pfam (NCBI)pfam04908   
Conserved Domain (NCBI)SH3BGRL2
DMDM Disease mutations83699
Blocks (Seattle)SH3BGRL2
PDB (SRS)2CT6   
PDB (PDBSum)2CT6   
PDB (IMB)2CT6   
PDB (RSDB)2CT6   
Structural Biology KnowledgeBase2CT6   
SCOP (Structural Classification of Proteins)2CT6   
CATH (Classification of proteins structures)2CT6   
SuperfamilyQ9UJC5
Human Protein Atlas [tissue]ENSG00000198478-SH3BGRL2 [tissue]
Peptide AtlasQ9UJC5
HPRD15331
IPIIPI00412272   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJC5
IntAct (EBI)Q9UJC5
FunCoupENSG00000198478
BioGRIDSH3BGRL2
STRING (EMBL)SH3BGRL2
ZODIACSH3BGRL2
Ontologies - Pathways
QuickGOQ9UJC5
Ontology : AmiGOnucleoplasm  cytoplasm  SH3 domain binding  nuclear membrane  extracellular exosome  
Ontology : EGO-EBInucleoplasm  cytoplasm  SH3 domain binding  nuclear membrane  extracellular exosome  
NDEx NetworkSH3BGRL2
Atlas of Cancer Signalling NetworkSH3BGRL2
Wikipedia pathwaysSH3BGRL2
Orthology - Evolution
OrthoDB83699
GeneTree (enSembl)ENSG00000198478
Phylogenetic Trees/Animal Genes : TreeFamSH3BGRL2
HOVERGENQ9UJC5
HOGENOMQ9UJC5
Homologs : HomoloGeneSH3BGRL2
Homology/Alignments : Family Browser (UCSC)SH3BGRL2
Gene fusions - Rearrangements
Fusion : QuiverSH3BGRL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH3BGRL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH3BGRL2
dbVarSH3BGRL2
ClinVarSH3BGRL2
1000_GenomesSH3BGRL2 
Exome Variant ServerSH3BGRL2
ExAC (Exome Aggregation Consortium)ENSG00000198478
GNOMAD BrowserENSG00000198478
Varsome BrowserSH3BGRL2
Genetic variants : HAPMAP83699
Genomic Variants (DGV)SH3BGRL2 [DGVbeta]
DECIPHERSH3BGRL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH3BGRL2 
Mutations
ICGC Data PortalSH3BGRL2 
TCGA Data PortalSH3BGRL2 
Broad Tumor PortalSH3BGRL2
OASIS PortalSH3BGRL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH3BGRL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH3BGRL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SH3BGRL2
DgiDB (Drug Gene Interaction Database)SH3BGRL2
DoCM (Curated mutations)SH3BGRL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH3BGRL2 (select a term)
intoGenSH3BGRL2
Cancer3DSH3BGRL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615678   
Orphanet
DisGeNETSH3BGRL2
MedgenSH3BGRL2
Genetic Testing Registry SH3BGRL2
NextProtQ9UJC5 [Medical]
TSGene83699
GENETestsSH3BGRL2
Target ValidationSH3BGRL2
Huge Navigator SH3BGRL2 [HugePedia]
snp3D : Map Gene to Disease83699
BioCentury BCIQSH3BGRL2
ClinGenSH3BGRL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83699
Chemical/Pharm GKB GenePA37978
Clinical trialSH3BGRL2
Miscellaneous
canSAR (ICR)SH3BGRL2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3BGRL2
EVEXSH3BGRL2
GoPubMedSH3BGRL2
iHOPSH3BGRL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:48 CEST 2018

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