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SH3BGRL3 (SH3 domain binding glutamate rich protein like 3)

Identity

Alias (NCBI)HEL-S-297
SH3BP-1
TIP-B1
HGNC (Hugo) SH3BGRL3
HGNC Previous nameSH3 domain binding glutamic acid-rich protein like 3
LocusID (NCBI) 83442
Atlas_Id 56502
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26280086 and ends at 26281522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCY2 (5p15.31) / SH3BGRL3 (1p36.11)NOP16 (5q35.2) / SH3BGRL3 (1p36.11)PITX1 (5q31.1) / SH3BGRL3 (1p36.11)
SH3BGRL3 (1p36.11) / APP (21q21.3)SH3BGRL3 (1p36.11) / BTF3 (5q13.2)SH3BGRL3 (1p36.11) / DYNC1H1 (14q32.31)
SH3BGRL3 (1p36.11) / HCRTR1 (1p35.2)SH3BGRL3 (1p36.11) / IQGAP1 (15q26.1)SH3BGRL3 (1p36.11) / NOP16 (5q35.2)
SH3BGRL3 (1p36.11) / TPM3 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SH3BGRL3   15568
Cards
Entrez_Gene (NCBI)SH3BGRL3    SH3 domain binding glutamate rich protein like 3
AliasesHEL-S-297; SH3BP-1; TIP-B1
GeneCards (Weizmann)SH3BGRL3
Ensembl hg19 (Hinxton)ENSG00000142669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142669 [Gene_View]  ENSG00000142669 [Sequence]  chr1:26280086-26281522 [Contig_View]  SH3BGRL3 [Vega]
ICGC DataPortalENSG00000142669
TCGA cBioPortalSH3BGRL3
AceView (NCBI)SH3BGRL3
Genatlas (Paris)SH3BGRL3
SOURCE (Princeton)SH3BGRL3
Genetics Home Reference (NIH)SH3BGRL3
Genomic and cartography
GoldenPath hg38 (UCSC)SH3BGRL3  -     chr1:26280086-26281522 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3BGRL3  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathSH3BGRL3 - 1p36.11 [CytoView hg19]  SH3BGRL3 - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000142669
Genome Data Viewer NCBISH3BGRL3 [Mapview hg19]  
OMIM615679   
Gene and transcription
Genbank (Entrez)AF247790 AF304163 AF466367 AJ297915 AK024884
RefSeq transcript (Entrez)NM_031286
Consensus coding sequences : CCDS (NCBI)SH3BGRL3
Gene ExpressionSH3BGRL3 [ NCBI-GEO ]   SH3BGRL3 [ EBI - ARRAY_EXPRESS ]   SH3BGRL3 [ SEEK ]   SH3BGRL3 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3BGRL3 [ Firebrowse - Broad ]
GenevisibleExpression of SH3BGRL3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83442
GTEX Portal (Tissue expression)SH3BGRL3
Human Protein AtlasENSG00000142669-SH3BGRL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H299   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H299  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H299
PhosPhoSitePlusQ9H299
Domaine pattern : Prosite (Expaxy)GLUTAREDOXIN_2 (PS51354)   
Domains : Interpro (EBI)Glut_rich_SH3-bd    Glutaredoxin    Thioredoxin-like_sf   
Domain families : Pfam (Sanger)SH3BGR (PF04908)   
Domain families : Pfam (NCBI)pfam04908   
Conserved Domain (NCBI)SH3BGRL3
PDB (RSDB)1SJ6   
PDB Europe1SJ6   
PDB (PDBSum)1SJ6   
PDB (IMB)1SJ6   
Structural Biology KnowledgeBase1SJ6   
SCOP (Structural Classification of Proteins)1SJ6   
CATH (Classification of proteins structures)1SJ6   
SuperfamilyQ9H299
AlphaFold pdb e-kbQ9H299   
Human Protein Atlas [tissue]ENSG00000142669-SH3BGRL3 [tissue]
HPRD15332
Protein Interaction databases
DIP (DOE-UCLA)Q9H299
IntAct (EBI)Q9H299
BioGRIDSH3BGRL3
STRING (EMBL)SH3BGRL3
ZODIACSH3BGRL3
Ontologies - Pathways
QuickGOQ9H299
Ontology : AmiGOprotein binding  cytoplasm  nuclear body  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  nuclear body  extracellular exosome  
NDEx NetworkSH3BGRL3
Atlas of Cancer Signalling NetworkSH3BGRL3
Wikipedia pathwaysSH3BGRL3
Orthology - Evolution
OrthoDB83442
GeneTree (enSembl)ENSG00000142669
Phylogenetic Trees/Animal Genes : TreeFamSH3BGRL3
Homologs : HomoloGeneSH3BGRL3
Homology/Alignments : Family Browser (UCSC)SH3BGRL3
Gene fusions - Rearrangements
Fusion : QuiverSH3BGRL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH3BGRL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH3BGRL3
dbVarSH3BGRL3
ClinVarSH3BGRL3
MonarchSH3BGRL3
1000_GenomesSH3BGRL3 
Exome Variant ServerSH3BGRL3
GNOMAD BrowserENSG00000142669
Varsome BrowserSH3BGRL3
ACMGSH3BGRL3 variants
VarityQ9H299
Genomic Variants (DGV)SH3BGRL3 [DGVbeta]
DECIPHERSH3BGRL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH3BGRL3 
Mutations
ICGC Data PortalSH3BGRL3 
TCGA Data PortalSH3BGRL3 
Broad Tumor PortalSH3BGRL3
OASIS PortalSH3BGRL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH3BGRL3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSH3BGRL3
Mutations and Diseases : HGMDSH3BGRL3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSH3BGRL3
DgiDB (Drug Gene Interaction Database)SH3BGRL3
DoCM (Curated mutations)SH3BGRL3
CIViC (Clinical Interpretations of Variants in Cancer)SH3BGRL3
Cancer3DSH3BGRL3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615679   
Orphanet
DisGeNETSH3BGRL3
MedgenSH3BGRL3
Genetic Testing Registry SH3BGRL3
NextProtQ9H299 [Medical]
GENETestsSH3BGRL3
Target ValidationSH3BGRL3
Huge Navigator SH3BGRL3 [HugePedia]
ClinGenSH3BGRL3
Clinical trials, drugs, therapy
MyCancerGenomeSH3BGRL3
Protein Interactions : CTDSH3BGRL3
Pharm GKB GenePA37979
PharosQ9H299
Clinical trialSH3BGRL3
Miscellaneous
canSAR (ICR)SH3BGRL3
HarmonizomeSH3BGRL3
DataMed IndexSH3BGRL3
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSH3BGRL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:31:00 CEST 2021

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