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SH3BP2 (SH3-domain binding protein 2)

Identity

Other names3BP-2
3BP2
CRBM
CRPM
HGNC (Hugo) SH3BP2
LocusID (NCBI) 6452
Location 4p16.3
Location_base_pair Starts at 2794750 and ends at 2842823 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SH3BP2   10825
Cards
Entrez_Gene (NCBI)SH3BP2  6452  SH3-domain binding protein 2
GeneCards (Weizmann)SH3BP2
Ensembl (Hinxton)ENSG00000087266 [Gene_View]  chr4:2794750-2842823 [Contig_View]  SH3BP2 [Vega]
AceView (NCBI)SH3BP2
Genatlas (Paris)SH3BP2
WikiGenes6452
SOURCE (Princeton)NM_001122681 NM_001145855 NM_001145856 NM_003023
Genomic and cartography
GoldenPath (UCSC)SH3BP2  -  4p16.3   chr4:2794750-2842823 +  4p16.3   [Description]    (hg19-Feb_2009)
EnsemblSH3BP2 - 4p16.3 [CytoView]
Mapping of homologs : NCBISH3BP2 [Mapview]
OMIM118400   602104   
Gene and transcription
Genbank (Entrez)AB000462 AB000463 AF000936 AK124073 AK126537
RefSeq transcript (Entrez)NM_001122681 NM_001145855 NM_001145856 NM_003023
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_011609 NT_006051 NW_001838896 NW_004929314
Consensus coding sequences : CCDS (NCBI)SH3BP2
Cluster EST : UnigeneHs.167679 [ NCBI ]
CGAP (NCI)Hs.167679
Alternative Splicing : Fast-db (Paris)GSHG0022415
Alternative Splicing GalleryENSG00000087266
Gene ExpressionSH3BP2 [ NCBI-GEO ]     SH3BP2 [ SEEK ]   SH3BP2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78314 (Uniprot)
NextProtP78314  [Medical]
With graphics : InterProP78314
Splice isoforms : SwissVarP78314 (Swissvar)
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    SH2 (PS50001)   
Domains : Interpro (EBI)PH_like_dom    Pleckstrin_homology    SH2   
Related proteins : CluSTrP78314
Domain families : Pfam (Sanger)PH (PF00169)    SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00169    pfam00017   
Domain families : Smart (EMBL)PH (SM00233)  SH2 (SM00252)  
DMDM Disease mutations6452
Blocks (Seattle)P78314
PDB (SRS)2CR4    3TWR   
PDB (PDBSum)2CR4    3TWR   
PDB (IMB)2CR4    3TWR   
PDB (RSDB)2CR4    3TWR   
Human Protein AtlasENSG00000087266
Peptide AtlasP78314
HPRD03657
IPIIPI00219071   IPI00218997   IPI00922541   IPI00446438   IPI00926189   IPI00927717   IPI00964397   IPI00964137   IPI00965372   IPI00965585   IPI00963865   IPI00967096   
Protein Interaction databases
DIP (DOE-UCLA)P78314
IntAct (EBI)P78314
FunCoupENSG00000087266
BioGRIDSH3BP2
InParanoidP78314
Interologous Interaction database P78314
IntegromeDBSH3BP2
STRING (EMBL)SH3BP2
Ontologies - Pathways
Ontology : AmiGOSH3/SH2 adaptor activity  protein binding  phospholipid binding  signal transduction  SH3 domain binding  
Ontology : EGO-EBISH3/SH2 adaptor activity  protein binding  phospholipid binding  signal transduction  SH3 domain binding  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
REACTOMESH3BP2
Protein Interaction DatabaseSH3BP2
Wikipedia pathwaysSH3BP2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SH3BP2
SNP (GeneSNP Utah)SH3BP2
SNP : HGBaseSH3BP2
Genetic variants : HAPMAPSH3BP2
1000_GenomesSH3BP2 
ICGC programENSG00000087266 
Somatic Mutations in Cancer : COSMICSH3BP2 
CONAN: Copy Number AnalysisSH3BP2 
Mutations and Diseases : HGMDSH3BP2
OMIM118400    602104   
GENETestsSH3BP2
Disease Genetic AssociationSH3BP2
Huge Navigator SH3BP2 [HugePedia]  SH3BP2 [HugeCancerGEM]
Genomic VariantsSH3BP2  SH3BP2 [DGVbeta]
Exome VariantSH3BP2
dbVarSH3BP2
ClinVarSH3BP2
snp3D : Map Gene to Disease6452
General knowledge
Homologs : HomoloGeneSH3BP2
Homology/Alignments : Family Browser (UCSC)SH3BP2
Phylogenetic Trees/Animal Genes : TreeFamSH3BP2
Chemical/Protein Interactions : CTD6452
Chemical/Pharm GKB GenePA35733
Clinical trialSH3BP2
Cancer Resource (Charite)ENSG00000087266
Other databases
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
CoreMineSH3BP2
iHOPSH3BP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:11:38 CEST 2014

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