Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SH3BP5-AS1 (SH3BP5 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) SH3BP5-AS1
LocusID (NCBI) 100505696
Atlas_Id 73203
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 15254184 and ends at 15264498 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH3BP5-AS1   44501
Cards
Entrez_Gene (NCBI)SH3BP5-AS1  100505696  SH3BP5 antisense RNA 1
Aliases
GeneCards (Weizmann)SH3BP5-AS1
Ensembl hg19 (Hinxton)ENSG00000224660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224660 [Gene_View]  chr3:15254184-15264498 [Contig_View]  SH3BP5-AS1 [Vega]
ICGC DataPortalENSG00000224660
TCGA cBioPortalSH3BP5-AS1
AceView (NCBI)SH3BP5-AS1
Genatlas (Paris)SH3BP5-AS1
WikiGenes100505696
SOURCE (Princeton)SH3BP5-AS1
Genetics Home Reference (NIH)SH3BP5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SH3BP5-AS1  -     chr3:15254184-15264498 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3BP5-AS1  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblSH3BP5-AS1 - 3p25.1 [CytoView hg19]  SH3BP5-AS1 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBISH3BP5-AS1 [Mapview hg19]  SH3BP5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL133111 BM684368 CA447289
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH3BP5-AS1
Cluster EST : UnigeneHs.745026 [ NCBI ]
CGAP (NCI)Hs.745026
Alternative Splicing GalleryENSG00000224660
Gene ExpressionSH3BP5-AS1 [ NCBI-GEO ]   SH3BP5-AS1 [ EBI - ARRAY_EXPRESS ]   SH3BP5-AS1 [ SEEK ]   SH3BP5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3BP5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505696
GTEX Portal (Tissue expression)SH3BP5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SH3BP5-AS1
DMDM Disease mutations100505696
Blocks (Seattle)SH3BP5-AS1
Human Protein AtlasENSG00000224660
Protein Interaction databases
FunCoupENSG00000224660
BioGRIDSH3BP5-AS1
STRING (EMBL)SH3BP5-AS1
ZODIACSH3BP5-AS1
Ontologies - Pathways
Huge Navigator SH3BP5-AS1 [HugePedia]
snp3D : Map Gene to Disease100505696
BioCentury BCIQSH3BP5-AS1
ClinGenSH3BP5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505696
Clinical trialSH3BP5-AS1
Miscellaneous
canSAR (ICR)SH3BP5-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3BP5-AS1
EVEXSH3BP5-AS1
GoPubMedSH3BP5-AS1
iHOPSH3BP5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.