Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SH3D21 (SH3 domain containing 21)

Identity

Alias_namesC1orf113
chromosome 1 open reading frame 113
Alias_symbol (synonym)FLJ22938
Other alias
HGNC (Hugo) SH3D21
LocusID (NCBI) 79729
Atlas_Id 73205
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36306393 and ends at 36321347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SH3D21 (1p34.3) / PRMT1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH3D21   26236
Cards
Entrez_Gene (NCBI)SH3D21  79729  SH3 domain containing 21
AliasesC1orf113
GeneCards (Weizmann)SH3D21
Ensembl hg19 (Hinxton)ENSG00000214193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214193 [Gene_View]  chr1:36306393-36321347 [Contig_View]  SH3D21 [Vega]
ICGC DataPortalENSG00000214193
TCGA cBioPortalSH3D21
AceView (NCBI)SH3D21
Genatlas (Paris)SH3D21
WikiGenes79729
SOURCE (Princeton)SH3D21
Genetics Home Reference (NIH)SH3D21
Genomic and cartography
GoldenPath hg38 (UCSC)SH3D21  -     chr1:36306393-36321347 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3D21  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblSH3D21 - 1p34.3 [CytoView hg19]  SH3D21 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBISH3D21 [Mapview hg19]  SH3D21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026591 AK056459 AK297015 AW194075 BC036763
RefSeq transcript (Entrez)NM_001162530 NM_024676
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH3D21
Cluster EST : UnigeneHs.524496 [ NCBI ]
CGAP (NCI)Hs.524496
Alternative Splicing GalleryENSG00000214193
Gene ExpressionSH3D21 [ NCBI-GEO ]   SH3D21 [ EBI - ARRAY_EXPRESS ]   SH3D21 [ SEEK ]   SH3D21 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3D21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79729
GTEX Portal (Tissue expression)SH3D21
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4FU49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4FU49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4FU49
Splice isoforms : SwissVarA4FU49
PhosPhoSitePlusA4FU49
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)   
Domains : Interpro (EBI)SH3_2    SH3_domain    Spectrin_alpha_SH3   
Domain families : Pfam (Sanger)SH3_2 (PF07653)   
Domain families : Pfam (NCBI)pfam07653   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)SH3D21
DMDM Disease mutations79729
Blocks (Seattle)SH3D21
SuperfamilyA4FU49
Human Protein AtlasENSG00000214193
Peptide AtlasA4FU49
HPRD08011
IPIIPI00893644   IPI00395985   IPI01008835   IPI01008859   IPI00479640   IPI00965552   
Protein Interaction databases
DIP (DOE-UCLA)A4FU49
IntAct (EBI)A4FU49
FunCoupENSG00000214193
BioGRIDSH3D21
STRING (EMBL)SH3D21
ZODIACSH3D21
Ontologies - Pathways
QuickGOA4FU49
Ontology : AmiGOnucleus  nucleoplasm  plasma membrane  extracellular exosome  
Ontology : EGO-EBInucleus  nucleoplasm  plasma membrane  extracellular exosome  
NDEx NetworkSH3D21
Atlas of Cancer Signalling NetworkSH3D21
Wikipedia pathwaysSH3D21
Orthology - Evolution
OrthoDB79729
GeneTree (enSembl)ENSG00000214193
Phylogenetic Trees/Animal Genes : TreeFamSH3D21
HOVERGENA4FU49
HOGENOMA4FU49
Homologs : HomoloGeneSH3D21
Homology/Alignments : Family Browser (UCSC)SH3D21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH3D21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH3D21
dbVarSH3D21
ClinVarSH3D21
1000_GenomesSH3D21 
Exome Variant ServerSH3D21
ExAC (Exome Aggregation Consortium)SH3D21 (select the gene name)
Genetic variants : HAPMAP79729
Genomic Variants (DGV)SH3D21 [DGVbeta]
DECIPHERSH3D21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSH3D21 
Mutations
ICGC Data PortalSH3D21 
TCGA Data PortalSH3D21 
Broad Tumor PortalSH3D21
OASIS PortalSH3D21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH3D21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH3D21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SH3D21
DgiDB (Drug Gene Interaction Database)SH3D21
DoCM (Curated mutations)SH3D21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH3D21 (select a term)
intoGenSH3D21
Cancer3DSH3D21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSH3D21
Genetic Testing Registry SH3D21
NextProtA4FU49 [Medical]
TSGene79729
GENETestsSH3D21
Target ValidationSH3D21
Huge Navigator SH3D21 [HugePedia]
snp3D : Map Gene to Disease79729
BioCentury BCIQSH3D21
ClinGenSH3D21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79729
Chemical/Pharm GKB GenePA142672497
Clinical trialSH3D21
Miscellaneous
canSAR (ICR)SH3D21 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3D21
EVEXSH3D21
GoPubMedSH3D21
iHOPSH3D21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.