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SH3RF3-AS1 (SH3RF3 antisense RNA 1)

Identity

Alias_namesSH3RF3 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SH3RF3-AS1
LocusID (NCBI) 100287216
Atlas_Id 73214
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109127328 and ends at 109130119 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH3RF3-AS1   44168
Cards
Entrez_Gene (NCBI)SH3RF3-AS1  100287216  SH3RF3 antisense RNA 1
Aliases
GeneCards (Weizmann)SH3RF3-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:109127328-109130119 [Contig_View]  SH3RF3-AS1 [Vega]
TCGA cBioPortalSH3RF3-AS1
AceView (NCBI)SH3RF3-AS1
Genatlas (Paris)SH3RF3-AS1
WikiGenes100287216
SOURCE (Princeton)SH3RF3-AS1
Genetics Home Reference (NIH)SH3RF3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SH3RF3-AS1  -     chr2:109127328-109130119 -  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3RF3-AS1  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblSH3RF3-AS1 - 2q13 [CytoView hg19]  SH3RF3-AS1 - 2q13 [CytoView hg38]
Mapping of homologs : NCBISH3RF3-AS1 [Mapview hg19]  SH3RF3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035291 AK297376
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH3RF3-AS1
Cluster EST : UnigeneHs.171244 [ NCBI ]
CGAP (NCI)Hs.171244
Gene ExpressionSH3RF3-AS1 [ NCBI-GEO ]   SH3RF3-AS1 [ EBI - ARRAY_EXPRESS ]   SH3RF3-AS1 [ SEEK ]   SH3RF3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3RF3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287216
GTEX Portal (Tissue expression)SH3RF3-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SH3RF3-AS1
DMDM Disease mutations100287216
Blocks (Seattle)SH3RF3-AS1
IPIIPI00920946   
Protein Interaction databases
BioGRIDSH3RF3-AS1
STRING (EMBL)SH3RF3-AS1
ZODIACSH3RF3-AS1
Ontologies - Pathways
Huge Navigator SH3RF3-AS1 [HugePedia]
snp3D : Map Gene to Disease100287216
BioCentury BCIQSH3RF3-AS1
ClinGenSH3RF3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287216
Clinical trialSH3RF3-AS1
Miscellaneous
canSAR (ICR)SH3RF3-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3RF3-AS1
EVEXSH3RF3-AS1
GoPubMedSH3RF3-AS1
iHOPSH3RF3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:19 CET 2017

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