Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SH3RF3 (SH3 domain containing ring finger 3)

Identity

Alias_namesSH3MD4
SH3 multiple domains 4
Alias_symbol (synonym)FLJ00204
POSH2
Other alias
HGNC (Hugo) SH3RF3
LocusID (NCBI) 344558
Atlas_Id 73213
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 109745997 and ends at 110262213 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EXOC2 (6p25.3) / SH3RF3 (2q12.3)PBX4 (19p13.11) / SH3RF3 (2q12.3)SH3RF3 (2q12.3) / PPP1R16B (20q11.23)
SH3RF3 (2q12.3) / SH3RF3 (2q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SH3RF3   24699
Cards
Entrez_Gene (NCBI)SH3RF3  344558  SH3 domain containing ring finger 3
AliasesPOSH2; SH3MD4
GeneCards (Weizmann)SH3RF3
Ensembl hg19 (Hinxton)ENSG00000172985 [Gene_View]  chr2:109745997-110262213 [Contig_View]  SH3RF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172985 [Gene_View]  chr2:109745997-110262213 [Contig_View]  SH3RF3 [Vega]
ICGC DataPortalENSG00000172985
TCGA cBioPortalSH3RF3
AceView (NCBI)SH3RF3
Genatlas (Paris)SH3RF3
WikiGenes344558
SOURCE (Princeton)SH3RF3
Genetics Home Reference (NIH)SH3RF3
Genomic and cartography
GoldenPath hg19 (UCSC)SH3RF3  -     chr2:109745997-110262213 +  2q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SH3RF3  -     2q12.3   [Description]    (hg38-Dec_2013)
EnsemblSH3RF3 - 2q12.3 [CytoView hg19]  SH3RF3 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBISH3RF3 [Mapview hg19]  SH3RF3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA916456 AK074131 AK093821 AL831825 DQ307286
RefSeq transcript (Entrez)NM_001099289
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303 NW_004929304
Consensus coding sequences : CCDS (NCBI)SH3RF3
Cluster EST : UnigeneHs.712087 [ NCBI ]
CGAP (NCI)Hs.712087
Alternative Splicing GalleryENSG00000172985
Gene ExpressionSH3RF3 [ NCBI-GEO ]   SH3RF3 [ EBI - ARRAY_EXPRESS ]   SH3RF3 [ SEEK ]   SH3RF3 [ MEM ]
Gene Expression Viewer (FireBrowse)SH3RF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344558
GTEX Portal (Tissue expression)SH3RF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEJ3
Splice isoforms : SwissVarQ8TEJ3
PhosPhoSitePlusQ8TEJ3
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)POSH2    SH3_domain    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SH3_9 (PF14604)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam14604    pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  SH3 (SM00326)  
Conserved Domain (NCBI)SH3RF3
DMDM Disease mutations344558
Blocks (Seattle)SH3RF3
SuperfamilyQ8TEJ3
Human Protein AtlasENSG00000172985
Peptide AtlasQ8TEJ3
IPIIPI00738974   IPI00847306   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEJ3
IntAct (EBI)Q8TEJ3
FunCoupENSG00000172985
BioGRIDSH3RF3
STRING (EMBL)SH3RF3
ZODIACSH3RF3
Ontologies - Pathways
QuickGOQ8TEJ3
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkSH3RF3
Atlas of Cancer Signalling NetworkSH3RF3
Wikipedia pathwaysSH3RF3
Orthology - Evolution
OrthoDB344558
GeneTree (enSembl)ENSG00000172985
Phylogenetic Trees/Animal Genes : TreeFamSH3RF3
HOVERGENQ8TEJ3
HOGENOMQ8TEJ3
Homologs : HomoloGeneSH3RF3
Homology/Alignments : Family Browser (UCSC)SH3RF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSH3RF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SH3RF3
dbVarSH3RF3
ClinVarSH3RF3
1000_GenomesSH3RF3 
Exome Variant ServerSH3RF3
ExAC (Exome Aggregation Consortium)SH3RF3 (select the gene name)
Genetic variants : HAPMAP344558
Genomic Variants (DGV)SH3RF3 [DGVbeta]
DECIPHER (Syndromes)2:109745997-110262213  ENSG00000172985
CONAN: Copy Number AnalysisSH3RF3 
Mutations
ICGC Data PortalSH3RF3 
TCGA Data PortalSH3RF3 
Broad Tumor PortalSH3RF3
OASIS PortalSH3RF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSH3RF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSH3RF3
BioMutasearch SH3RF3
DgiDB (Drug Gene Interaction Database)SH3RF3
DoCM (Curated mutations)SH3RF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SH3RF3 (select a term)
intoGenSH3RF3
Cancer3DSH3RF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSH3RF3
Genetic Testing Registry SH3RF3
NextProtQ8TEJ3 [Medical]
TSGene344558
GENETestsSH3RF3
Huge Navigator SH3RF3 [HugePedia]
snp3D : Map Gene to Disease344558
BioCentury BCIQSH3RF3
ClinGenSH3RF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344558
Chemical/Pharm GKB GenePA162403291
Clinical trialSH3RF3
Miscellaneous
canSAR (ICR)SH3RF3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3RF3
EVEXSH3RF3
GoPubMedSH3RF3
iHOPSH3RF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:06 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.