SH3TC1 (SH3 domain and tetratricopeptide repeats 1)

2014-11-01 Affiliation

Identity

HGNC

SH3TC1

LOCATION

4p16.1

LOCUSID

54436

ALIAS

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 54436
HGNC: 26009
Ensembl: ENSG00000125089

Variants:

dbSNP: 54436
ClinVar: 54436
TCGA: ENSG00000125089
COSMIC: SH3TC1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000125089	ENST00000245105	Q8TE82
ENSG00000125089	ENST00000382521	Q6NVH2
ENSG00000125089	ENST00000457650	E7EQR1
ENSG00000125089	ENST00000502669	D6RI07
ENSG00000125089	ENST00000507891	H0YAJ7
ENSG00000125089	ENST00000508641	H0YA34
ENSG00000125089	ENST00000509119	D6RC98
ENSG00000125089	ENST00000511002	H0Y9A4
ENSG00000125089	ENST00000512966	U3KQ04
ENSG00000125089	ENST00000515682	D6REB6

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
19240061	2009	Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.	75
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	62

Citation

Dessen P

SH3TC1 (SH3 domain and tetratricopeptide repeats 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73215/sh3tc1