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SH3TC2-DT (SH3TC2 divergent transcript)

Identity

Other alias-
HGNC (Hugo) SH3TC2-DT
LocusID (NCBI) 255187
Atlas_Id 78821
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149063317 and ends at 149109787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SH3TC2-DT   52905
Cards
Entrez_Gene (NCBI)SH3TC2-DT  255187  SH3TC2 divergent transcript
Aliases
GeneCards (Weizmann)SH3TC2-DT
Ensembl hg19 (Hinxton)ENSG00000250072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250072 [Gene_View]  ENSG00000250072 [Sequence]  chr5:149063317-149109787 [Contig_View]  SH3TC2-DT [Vega]
ICGC DataPortalENSG00000250072
TCGA cBioPortalSH3TC2-DT
AceView (NCBI)SH3TC2-DT
Genatlas (Paris)SH3TC2-DT
WikiGenes255187
SOURCE (Princeton)SH3TC2-DT
Genetics Home Reference (NIH)SH3TC2-DT
Genomic and cartography
GoldenPath hg38 (UCSC)SH3TC2-DT  -     chr5:149063317-149109787 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SH3TC2-DT  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblSH3TC2-DT - 5q32 [CytoView hg19]  SH3TC2-DT - 5q32 [CytoView hg38]
Mapping of homologs : NCBISH3TC2-DT [Mapview hg19]  SH3TC2-DT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA443842 AI200264 AK056780 BG178577 BX106527
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SH3TC2-DT
Cluster EST : UnigeneHs.733370 [ NCBI ]
CGAP (NCI)Hs.733370
Alternative Splicing GalleryENSG00000250072
Gene ExpressionSH3TC2-DT [ NCBI-GEO ]   SH3TC2-DT [ EBI - ARRAY_EXPRESS ]   SH3TC2-DT [ SEEK ]   SH3TC2-DT [ MEM ]
Gene Expression Viewer (FireBrowse)SH3TC2-DT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)255187
GTEX Portal (Tissue expression)SH3TC2-DT
Human Protein AtlasENSG00000250072-SH3TC2-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SH3TC2-DT
DMDM Disease mutations255187
Blocks (Seattle)SH3TC2-DT
Human Protein Atlas [tissue]ENSG00000250072-SH3TC2-DT [tissue]
Protein Interaction databases
FunCoupENSG00000250072
BioGRIDSH3TC2-DT
STRING (EMBL)SH3TC2-DT
ZODIACSH3TC2-DT
Ontologies - Pathways
Huge Navigator SH3TC2-DT [HugePedia]
snp3D : Map Gene to Disease255187
BioCentury BCIQSH3TC2-DT
ClinGenSH3TC2-DT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255187
Clinical trialSH3TC2-DT
Miscellaneous
canSAR (ICR)SH3TC2-DT (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSH3TC2-DT
EVEXSH3TC2-DT
GoPubMedSH3TC2-DT
iHOPSH3TC2-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:28:52 CEST 2018

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