Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHANK2-AS1 (SHANK2 antisense RNA 1)

Identity

Alias_namesSHANK2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SHANK2-AS1
LocusID (NCBI) 100874198
Atlas_Id 73218
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 70631094 and ends at 70635490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHANK2-AS1   40014
Cards
Entrez_Gene (NCBI)SHANK2-AS1  100874198  SHANK2 antisense RNA 1
Aliases
GeneCards (Weizmann)SHANK2-AS1
Ensembl hg19 (Hinxton)ENSG00000226627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226627 [Gene_View]  chr11:70631094-70635490 [Contig_View]  SHANK2-AS1 [Vega]
ICGC DataPortalENSG00000226627
TCGA cBioPortalSHANK2-AS1
AceView (NCBI)SHANK2-AS1
Genatlas (Paris)SHANK2-AS1
WikiGenes100874198
SOURCE (Princeton)SHANK2-AS1
Genetics Home Reference (NIH)SHANK2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SHANK2-AS1  -     chr11:70631094-70635490 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHANK2-AS1  -     11q13.4   [Description]    (hg19-Feb_2009)
EnsemblSHANK2-AS1 - 11q13.4 [CytoView hg19]  SHANK2-AS1 - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBISHANK2-AS1 [Mapview hg19]  SHANK2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097446
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHANK2-AS1
Cluster EST : UnigeneHs.656610 [ NCBI ]
CGAP (NCI)Hs.656610
Alternative Splicing GalleryENSG00000226627
Gene ExpressionSHANK2-AS1 [ NCBI-GEO ]   SHANK2-AS1 [ EBI - ARRAY_EXPRESS ]   SHANK2-AS1 [ SEEK ]   SHANK2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SHANK2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874198
GTEX Portal (Tissue expression)SHANK2-AS1
Human Protein AtlasENSG00000226627-SHANK2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHANK2-AS1
DMDM Disease mutations100874198
Blocks (Seattle)SHANK2-AS1
Human Protein Atlas [tissue]ENSG00000226627-SHANK2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000226627
BioGRIDSHANK2-AS1
STRING (EMBL)SHANK2-AS1
ZODIACSHANK2-AS1
Ontologies - Pathways
Huge Navigator SHANK2-AS1 [HugePedia]
snp3D : Map Gene to Disease100874198
BioCentury BCIQSHANK2-AS1
ClinGenSHANK2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874198
Clinical trialSHANK2-AS1
Miscellaneous
canSAR (ICR)SHANK2-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHANK2-AS1
EVEXSHANK2-AS1
GoPubMedSHANK2-AS1
iHOPSHANK2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:09 CET 2017

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