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SHANK2-AS3 (SHANK2 antisense RNA 3)

Identity

Alias (NCBI)C11orf76
HGNC (Hugo) SHANK2-AS3
HGNC Previous nameC11orf76
HGNC Previous namechromosome 11 open reading frame 76
 SHANK2 antisense RNA 3 (non-protein coding)
LocusID (NCBI) 220070
Atlas_Id 73219
Location 11q13.4  [Link to chromosome band 11q13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHANK2-AS3   25098
Cards
Entrez_Gene (NCBI)SHANK2-AS3  220070  SHANK2 antisense RNA 3
AliasesC11orf76
GeneCards (Weizmann)SHANK2-AS3
Ensembl hg19 (Hinxton)ENSG00000171671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171671 [Gene_View]  ENSG00000171671 [Sequence]  - [Contig_View]  SHANK2-AS3 [Vega]
ICGC DataPortalENSG00000171671
TCGA cBioPortalSHANK2-AS3
AceView (NCBI)SHANK2-AS3
Genatlas (Paris)SHANK2-AS3
WikiGenes220070
SOURCE (Princeton)SHANK2-AS3
Genetics Home Reference (NIH)SHANK2-AS3
Genomic and cartography
GoldenPath hg38 (UCSC)SHANK2-AS3  -  
GoldenPath hg19 (UCSC)SHANK2-AS3  -  
GoldenPathSHANK2-AS3 - [CytoView hg19]  SHANK2-AS3 - [CytoView hg38]
ImmunoBaseENSG00000171671
genome Data Viewer NCBISHANK2-AS3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC004224
RefSeq transcript (Entrez)NM_145308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHANK2-AS3
Alternative Splicing GalleryENSG00000171671
Gene ExpressionSHANK2-AS3 [ NCBI-GEO ]   SHANK2-AS3 [ EBI - ARRAY_EXPRESS ]   SHANK2-AS3 [ SEEK ]   SHANK2-AS3 [ MEM ]
Gene Expression Viewer (FireBrowse)SHANK2-AS3 [ Firebrowse - Broad ]
GenevisibleExpression of SHANK2-AS3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220070
GTEX Portal (Tissue expression)SHANK2-AS3
Human Protein AtlasENSG00000171671-SHANK2-AS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTD1
Splice isoforms : SwissVarQ9BTD1
PhosPhoSitePlusQ9BTD1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHANK2-AS3
DMDM Disease mutations220070
Blocks (Seattle)SHANK2-AS3
SuperfamilyQ9BTD1
Human Protein Atlas [tissue]ENSG00000171671-SHANK2-AS3 [tissue]
Peptide AtlasQ9BTD1
HPRD14132
IPIIPI00032364   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTD1
IntAct (EBI)Q9BTD1
FunCoupENSG00000171671
BioGRIDSHANK2-AS3
STRING (EMBL)SHANK2-AS3
ZODIACSHANK2-AS3
Ontologies - Pathways
QuickGOQ9BTD1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSHANK2-AS3
Atlas of Cancer Signalling NetworkSHANK2-AS3
Wikipedia pathwaysSHANK2-AS3
Orthology - Evolution
OrthoDB220070
GeneTree (enSembl)ENSG00000171671
Phylogenetic Trees/Animal Genes : TreeFamSHANK2-AS3
HOGENOMQ9BTD1
Homologs : HomoloGeneSHANK2-AS3
Homology/Alignments : Family Browser (UCSC)SHANK2-AS3
Gene fusions - Rearrangements
Fusion : QuiverSHANK2-AS3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHANK2-AS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHANK2-AS3
dbVarSHANK2-AS3
ClinVarSHANK2-AS3
1000_GenomesSHANK2-AS3 
Exome Variant ServerSHANK2-AS3
GNOMAD BrowserENSG00000171671
Varsome BrowserSHANK2-AS3
Genetic variants : HAPMAP220070
Genomic Variants (DGV)SHANK2-AS3 [DGVbeta]
DECIPHERSHANK2-AS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHANK2-AS3 
Mutations
ICGC Data PortalSHANK2-AS3 
TCGA Data PortalSHANK2-AS3 
Broad Tumor PortalSHANK2-AS3
OASIS PortalSHANK2-AS3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSHANK2-AS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHANK2-AS3
DgiDB (Drug Gene Interaction Database)SHANK2-AS3
DoCM (Curated mutations)SHANK2-AS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHANK2-AS3 (select a term)
intoGenSHANK2-AS3
Cancer3DSHANK2-AS3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSHANK2-AS3
MedgenSHANK2-AS3
Genetic Testing Registry SHANK2-AS3
NextProtQ9BTD1 [Medical]
TSGene220070
GENETestsSHANK2-AS3
Target ValidationSHANK2-AS3
Huge Navigator SHANK2-AS3 [HugePedia]
snp3D : Map Gene to Disease220070
BioCentury BCIQSHANK2-AS3
ClinGenSHANK2-AS3
Clinical trials, drugs, therapy
Protein Interactions : CTD220070
Pharm GKB GenePA144596495
Clinical trialSHANK2-AS3
Miscellaneous
canSAR (ICR)SHANK2-AS3 (select the gene name)
HarmonizomeSHANK2-AS3
DataMed IndexSHANK2-AS3
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHANK2-AS3
EVEXSHANK2-AS3
GoPubMedSHANK2-AS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:27:36 CEST 2020

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