Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHCBP1L (SHC binding and spindle associated 1 like)

Identity

Alias_namesC1orf14
chromosome 1 open reading frame 14
SHC SH2-domain binding protein 1-like
Other aliasGE36
HGNC (Hugo) SHCBP1L
LocusID (NCBI) 81626
Atlas_Id 73222
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 182899863 and ends at 182953525 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHCBP1L   16788
Cards
Entrez_Gene (NCBI)SHCBP1L  81626  SHC binding and spindle associated 1 like
AliasesC1orf14; GE36
GeneCards (Weizmann)SHCBP1L
Ensembl hg19 (Hinxton)ENSG00000157060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157060 [Gene_View]  chr1:182899863-182953525 [Contig_View]  SHCBP1L [Vega]
ICGC DataPortalENSG00000157060
TCGA cBioPortalSHCBP1L
AceView (NCBI)SHCBP1L
Genatlas (Paris)SHCBP1L
WikiGenes81626
SOURCE (Princeton)SHCBP1L
Genetics Home Reference (NIH)SHCBP1L
Genomic and cartography
GoldenPath hg38 (UCSC)SHCBP1L  -     chr1:182899863-182953525 -  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHCBP1L  -     1q25.3   [Description]    (hg19-Feb_2009)
EnsemblSHCBP1L - 1q25.3 [CytoView hg19]  SHCBP1L - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBISHCBP1L [Mapview hg19]  SHCBP1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA448460 AF288397 AF288398 BC026084 BC026086
RefSeq transcript (Entrez)NM_001345928 NM_030933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHCBP1L
Cluster EST : UnigeneHs.497034 [ NCBI ]
CGAP (NCI)Hs.497034
Alternative Splicing GalleryENSG00000157060
Gene ExpressionSHCBP1L [ NCBI-GEO ]   SHCBP1L [ EBI - ARRAY_EXPRESS ]   SHCBP1L [ SEEK ]   SHCBP1L [ MEM ]
Gene Expression Viewer (FireBrowse)SHCBP1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81626
GTEX Portal (Tissue expression)SHCBP1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZQ2
Splice isoforms : SwissVarQ9BZQ2
PhosPhoSitePlusQ9BZQ2
Domains : Interpro (EBI)Carb-bd_sugar_hydrolysis-dom    PbH1    Pectin_lyas_fold    Pectin_lyase_fold/virulence   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)CASH (SM00722)  PbH1 (SM00710)  
Conserved Domain (NCBI)SHCBP1L
DMDM Disease mutations81626
Blocks (Seattle)SHCBP1L
SuperfamilyQ9BZQ2
Human Protein AtlasENSG00000157060
Peptide AtlasQ9BZQ2
HPRD16634
IPIIPI00843907   IPI00844048   IPI00008493   IPI00844018   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZQ2
IntAct (EBI)Q9BZQ2
FunCoupENSG00000157060
BioGRIDSHCBP1L
STRING (EMBL)SHCBP1L
ZODIACSHCBP1L
Ontologies - Pathways
QuickGOQ9BZQ2
Ontology : AmiGOcytoplasm  spermatogenesis  cell differentiation  meiotic spindle  positive regulation of chromosome organization  
Ontology : EGO-EBIcytoplasm  spermatogenesis  cell differentiation  meiotic spindle  positive regulation of chromosome organization  
NDEx NetworkSHCBP1L
Atlas of Cancer Signalling NetworkSHCBP1L
Wikipedia pathwaysSHCBP1L
Orthology - Evolution
OrthoDB81626
GeneTree (enSembl)ENSG00000157060
Phylogenetic Trees/Animal Genes : TreeFamSHCBP1L
HOVERGENQ9BZQ2
HOGENOMQ9BZQ2
Homologs : HomoloGeneSHCBP1L
Homology/Alignments : Family Browser (UCSC)SHCBP1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHCBP1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHCBP1L
dbVarSHCBP1L
ClinVarSHCBP1L
1000_GenomesSHCBP1L 
Exome Variant ServerSHCBP1L
ExAC (Exome Aggregation Consortium)SHCBP1L (select the gene name)
Genetic variants : HAPMAP81626
Genomic Variants (DGV)SHCBP1L [DGVbeta]
DECIPHERSHCBP1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHCBP1L 
Mutations
ICGC Data PortalSHCBP1L 
TCGA Data PortalSHCBP1L 
Broad Tumor PortalSHCBP1L
OASIS PortalSHCBP1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHCBP1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHCBP1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHCBP1L
DgiDB (Drug Gene Interaction Database)SHCBP1L
DoCM (Curated mutations)SHCBP1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHCBP1L (select a term)
intoGenSHCBP1L
Cancer3DSHCBP1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSHCBP1L
Genetic Testing Registry SHCBP1L
NextProtQ9BZQ2 [Medical]
TSGene81626
GENETestsSHCBP1L
Target ValidationSHCBP1L
Huge Navigator SHCBP1L [HugePedia]
snp3D : Map Gene to Disease81626
BioCentury BCIQSHCBP1L
ClinGenSHCBP1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81626
Chemical/Pharm GKB GenePA25603
Clinical trialSHCBP1L
Miscellaneous
canSAR (ICR)SHCBP1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHCBP1L
EVEXSHCBP1L
GoPubMedSHCBP1L
iHOPSHCBP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 1s:37:6 BEST 2017

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