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SHD (Src homology 2 domain containing transforming protein D)

Identity

Other alias-
HGNC (Hugo) SHD
LocusID (NCBI) 56961
Atlas_Id 42292
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4278601 and ends at 4290723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUP107 (12q15) / SHD (19p13.3)SHD (19p13.3) / DAZ4 (Yq11.23)NUP107 12q15 / SHD 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHD   30633
Cards
Entrez_Gene (NCBI)SHD  56961  Src homology 2 domain containing transforming protein D
Aliases
GeneCards (Weizmann)SHD
Ensembl hg19 (Hinxton)ENSG00000105251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105251 [Gene_View]  chr19:4278601-4290723 [Contig_View]  SHD [Vega]
ICGC DataPortalENSG00000105251
TCGA cBioPortalSHD
AceView (NCBI)SHD
Genatlas (Paris)SHD
WikiGenes56961
SOURCE (Princeton)SHD
Genetics Home Reference (NIH)SHD
Genomic and cartography
GoldenPath hg38 (UCSC)SHD  -     chr19:4278601-4290723 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHD  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSHD - 19p13.3 [CytoView hg19]  SHD - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISHD [Mapview hg19]  SHD [Mapview hg38]
OMIM610481   
Gene and transcription
Genbank (Entrez)AK055673 AK056268 AL390078 BC007206 HQ448179
RefSeq transcript (Entrez)NM_020209
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHD
Cluster EST : UnigeneHs.7423 [ NCBI ]
CGAP (NCI)Hs.7423
Alternative Splicing GalleryENSG00000105251
Gene ExpressionSHD [ NCBI-GEO ]   SHD [ EBI - ARRAY_EXPRESS ]   SHD [ SEEK ]   SHD [ MEM ]
Gene Expression Viewer (FireBrowse)SHD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56961
GTEX Portal (Tissue expression)SHD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IW2
Splice isoforms : SwissVarQ96IW2
PhosPhoSitePlusQ96IW2
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)SH2   
Domain families : Pfam (Sanger)SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00017   
Domain families : Smart (EMBL)SH2 (SM00252)  
Conserved Domain (NCBI)SHD
DMDM Disease mutations56961
Blocks (Seattle)SHD
SuperfamilyQ96IW2
Human Protein AtlasENSG00000105251
Peptide AtlasQ96IW2
HPRD15337
IPIIPI00400780   IPI01012470   
Protein Interaction databases
DIP (DOE-UCLA)Q96IW2
IntAct (EBI)Q96IW2
FunCoupENSG00000105251
BioGRIDSHD
STRING (EMBL)SHD
ZODIACSHD
Ontologies - Pathways
QuickGOQ96IW2
Ontology : AmiGOSH3/SH2 adaptor activity  protein binding  signal transduction  positive regulation of signal transduction  
Ontology : EGO-EBISH3/SH2 adaptor activity  protein binding  signal transduction  positive regulation of signal transduction  
NDEx NetworkSHD
Atlas of Cancer Signalling NetworkSHD
Wikipedia pathwaysSHD
Orthology - Evolution
OrthoDB56961
GeneTree (enSembl)ENSG00000105251
Phylogenetic Trees/Animal Genes : TreeFamSHD
HOVERGENQ96IW2
HOGENOMQ96IW2
Homologs : HomoloGeneSHD
Homology/Alignments : Family Browser (UCSC)SHD
Gene fusions - Rearrangements
Fusion : MitelmanNUP107/SHD [12q15/19p13.3]  [t(12;19)(q15;p13)]  
Fusion: TCGANUP107 12q15 SHD 19p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHD
dbVarSHD
ClinVarSHD
1000_GenomesSHD 
Exome Variant ServerSHD
ExAC (Exome Aggregation Consortium)SHD (select the gene name)
Genetic variants : HAPMAP56961
Genomic Variants (DGV)SHD [DGVbeta]
DECIPHERSHD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHD 
Mutations
ICGC Data PortalSHD 
TCGA Data PortalSHD 
Broad Tumor PortalSHD
OASIS PortalSHD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHD
DgiDB (Drug Gene Interaction Database)SHD
DoCM (Curated mutations)SHD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHD (select a term)
intoGenSHD
Cancer3DSHD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610481   
Orphanet
MedgenSHD
Genetic Testing Registry SHD
NextProtQ96IW2 [Medical]
TSGene56961
GENETestsSHD
Target ValidationSHD
Huge Navigator SHD [HugePedia]
snp3D : Map Gene to Disease56961
BioCentury BCIQSHD
ClinGenSHD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56961
Chemical/Pharm GKB GenePA142670918
Clinical trialSHD
Miscellaneous
canSAR (ICR)SHD (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHD
EVEXSHD
GoPubMedSHD
iHOPSHD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:14:26 CEST 2017

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