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SHE (Src homology 2 domain containing E)

Identity

Other alias-
HGNC (Hugo) SHE
LocusID (NCBI) 126669
Atlas_Id 73223
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 154479478 and ends at 154502050 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHE   27004
Cards
Entrez_Gene (NCBI)SHE  126669  Src homology 2 domain containing E
Aliases
GeneCards (Weizmann)SHE
Ensembl hg19 (Hinxton)ENSG00000169291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169291 [Gene_View]  chr1:154479478-154502050 [Contig_View]  SHE [Vega]
ICGC DataPortalENSG00000169291
TCGA cBioPortalSHE
AceView (NCBI)SHE
Genatlas (Paris)SHE
WikiGenes126669
SOURCE (Princeton)SHE
Genetics Home Reference (NIH)SHE
Genomic and cartography
GoldenPath hg38 (UCSC)SHE  -     chr1:154479478-154502050 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHE  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblSHE - 1q21.3 [CytoView hg19]  SHE - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBISHE [Mapview hg19]  SHE [Mapview hg38]
OMIM610482   
Gene and transcription
Genbank (Entrez)AI797276 AK074067 AK126006 AK131004 BC117210
RefSeq transcript (Entrez)NM_001010846
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHE
Cluster EST : UnigeneHs.591481 [ NCBI ]
CGAP (NCI)Hs.591481
Alternative Splicing GalleryENSG00000169291
Gene ExpressionSHE [ NCBI-GEO ]   SHE [ EBI - ARRAY_EXPRESS ]   SHE [ SEEK ]   SHE [ MEM ]
Gene Expression Viewer (FireBrowse)SHE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126669
GTEX Portal (Tissue expression)SHE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZ18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZ18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZ18
Splice isoforms : SwissVarQ5VZ18
PhosPhoSitePlusQ5VZ18
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)SH2   
Domain families : Pfam (Sanger)SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00017   
Domain families : Smart (EMBL)SH2 (SM00252)  
Conserved Domain (NCBI)SHE
DMDM Disease mutations126669
Blocks (Seattle)SHE
SuperfamilyQ5VZ18
Human Protein AtlasENSG00000169291
Peptide AtlasQ5VZ18
HPRD17293
IPIIPI00402077   IPI01025332   IPI01025200   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZ18
IntAct (EBI)Q5VZ18
FunCoupENSG00000169291
BioGRIDSHE
STRING (EMBL)SHE
ZODIACSHE
Ontologies - Pathways
QuickGOQ5VZ18
Ontology : AmiGOSH3/SH2 adaptor activity  protein binding  signal transduction  positive regulation of signal transduction  
Ontology : EGO-EBISH3/SH2 adaptor activity  protein binding  signal transduction  positive regulation of signal transduction  
NDEx NetworkSHE
Atlas of Cancer Signalling NetworkSHE
Wikipedia pathwaysSHE
Orthology - Evolution
OrthoDB126669
GeneTree (enSembl)ENSG00000169291
Phylogenetic Trees/Animal Genes : TreeFamSHE
HOVERGENQ5VZ18
HOGENOMQ5VZ18
Homologs : HomoloGeneSHE
Homology/Alignments : Family Browser (UCSC)SHE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHE
dbVarSHE
ClinVarSHE
1000_GenomesSHE 
Exome Variant ServerSHE
ExAC (Exome Aggregation Consortium)SHE (select the gene name)
Genetic variants : HAPMAP126669
Genomic Variants (DGV)SHE [DGVbeta]
DECIPHERSHE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHE 
Mutations
ICGC Data PortalSHE 
TCGA Data PortalSHE 
Broad Tumor PortalSHE
OASIS PortalSHE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHE
DgiDB (Drug Gene Interaction Database)SHE
DoCM (Curated mutations)SHE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHE (select a term)
intoGenSHE
Cancer3DSHE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610482   
Orphanet
MedgenSHE
Genetic Testing Registry SHE
NextProtQ5VZ18 [Medical]
TSGene126669
GENETestsSHE
Huge Navigator SHE [HugePedia]
snp3D : Map Gene to Disease126669
BioCentury BCIQSHE
ClinGenSHE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126669
Chemical/Pharm GKB GenePA142670919
Clinical trialSHE
Miscellaneous
canSAR (ICR)SHE (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHE
EVEXSHE
GoPubMedSHE
iHOPSHE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:53:01 CEST 2017

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