Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SHF (Src homology 2 domain containing F)

Identity

Other alias-
HGNC (Hugo) SHF
LocusID (NCBI) 90525
Atlas_Id 73224
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45459412 and ends at 45480165 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHF   25116
Cards
Entrez_Gene (NCBI)SHF  90525  Src homology 2 domain containing F
Aliases
GeneCards (Weizmann)SHF
Ensembl hg19 (Hinxton)ENSG00000138606 [Gene_View]  chr15:45459412-45480165 [Contig_View]  SHF [Vega]
Ensembl hg38 (Hinxton)ENSG00000138606 [Gene_View]  chr15:45459412-45480165 [Contig_View]  SHF [Vega]
ICGC DataPortalENSG00000138606
TCGA cBioPortalSHF
AceView (NCBI)SHF
Genatlas (Paris)SHF
WikiGenes90525
SOURCE (Princeton)SHF
Genetics Home Reference (NIH)SHF
Genomic and cartography
GoldenPath hg19 (UCSC)SHF  -     chr15:45459412-45480165 -  15q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SHF  -     15q21.1   [Description]    (hg38-Dec_2013)
EnsemblSHF - 15q21.1 [CytoView hg19]  SHF - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISHF [Mapview hg19]  SHF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094391 AK096267 AK123658 AK301625 AK303749
RefSeq transcript (Entrez)NM_001301168 NM_001301169 NM_001301170 NM_001301171 NM_138356
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SHF
Cluster EST : UnigeneHs.310399 [ NCBI ]
CGAP (NCI)Hs.310399
Alternative Splicing GalleryENSG00000138606
Gene ExpressionSHF [ NCBI-GEO ]   SHF [ EBI - ARRAY_EXPRESS ]   SHF [ SEEK ]   SHF [ MEM ]
Gene Expression Viewer (FireBrowse)SHF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90525
GTEX Portal (Tissue expression)SHF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7M4L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7M4L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7M4L6
Splice isoforms : SwissVarQ7M4L6
PhosPhoSitePlusQ7M4L6
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)SH2   
Domain families : Pfam (Sanger)SH2 (PF00017)   
Domain families : Pfam (NCBI)pfam00017   
Domain families : Smart (EMBL)SH2 (SM00252)  
Conserved Domain (NCBI)SHF
DMDM Disease mutations90525
Blocks (Seattle)SHF
SuperfamilyQ7M4L6
Human Protein AtlasENSG00000138606
Peptide AtlasQ7M4L6
HPRD14272
IPIIPI00394693   IPI00902489   IPI00908322   IPI00395388   IPI01012132   IPI00479544   
Protein Interaction databases
DIP (DOE-UCLA)Q7M4L6
IntAct (EBI)Q7M4L6
FunCoupENSG00000138606
BioGRIDSHF
STRING (EMBL)SHF
ZODIACSHF
Ontologies - Pathways
QuickGOQ7M4L6
Ontology : AmiGOapoptotic process  
Ontology : EGO-EBIapoptotic process  
NDEx NetworkSHF
Atlas of Cancer Signalling NetworkSHF
Wikipedia pathwaysSHF
Orthology - Evolution
OrthoDB90525
GeneTree (enSembl)ENSG00000138606
Phylogenetic Trees/Animal Genes : TreeFamSHF
HOVERGENQ7M4L6
HOGENOMQ7M4L6
Homologs : HomoloGeneSHF
Homology/Alignments : Family Browser (UCSC)SHF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHF
dbVarSHF
ClinVarSHF
1000_GenomesSHF 
Exome Variant ServerSHF
ExAC (Exome Aggregation Consortium)SHF (select the gene name)
Genetic variants : HAPMAP90525
Genomic Variants (DGV)SHF [DGVbeta]
DECIPHER (Syndromes)15:45459412-45480165  ENSG00000138606
CONAN: Copy Number AnalysisSHF 
Mutations
ICGC Data PortalSHF 
TCGA Data PortalSHF 
Broad Tumor PortalSHF
OASIS PortalSHF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHF
DgiDB (Drug Gene Interaction Database)SHF
DoCM (Curated mutations)SHF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHF (select a term)
intoGenSHF
Cancer3DSHF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSHF
Genetic Testing Registry SHF
NextProtQ7M4L6 [Medical]
TSGene90525
GENETestsSHF
Huge Navigator SHF [HugePedia]
snp3D : Map Gene to Disease90525
BioCentury BCIQSHF
ClinGenSHF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90525
Chemical/Pharm GKB GenePA142670920
Clinical trialSHF
Miscellaneous
canSAR (ICR)SHF (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHF
EVEXSHF
GoPubMedSHF
iHOPSHF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.