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SHFL (shiftless antiviral inhibitor of ribosomal frameshifting)

Identity

Alias (NCBI)C19orf66
IRAV
RyDEN
SFL
HGNC (Hugo) SHFL
HGNC Alias symbFLJ11286
RyDEN
HGNC Alias nameRepressor of yield of Dengue virus
LocusID (NCBI) 55337
Atlas_Id 61034
Location 19p13.2  [Link to chromosome band 19p13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(8;19)(q23;p13) TRPS1/C19orf66


External links

Nomenclature
HGNC (Hugo)SHFL   25649
Cards
Entrez_Gene (NCBI)SHFL    shiftless antiviral inhibitor of ribosomal frameshifting
AliasesC19orf66; IRAV; RyDEN; SFL
GeneCards (Weizmann)SHFL
Ensembl hg19 (Hinxton)ENSG00000130813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130813 [Gene_View]  ENSG00000130813 [Sequence]  - [Contig_View]  SHFL [Vega]
ICGC DataPortalENSG00000130813
TCGA cBioPortalSHFL
AceView (NCBI)SHFL
Genatlas (Paris)SHFL
SOURCE (Princeton)SHFL
Genetics Home Reference (NIH)SHFL
Genomic and cartography
GoldenPath hg38 (UCSC)SHFL  -  
GoldenPath hg19 (UCSC)SHFL  -  
GoldenPathSHFL - [CytoView hg19]  SHFL - [CytoView hg38]
ImmunoBaseENSG00000130813
genome Data Viewer NCBISHFL [Mapview hg19]  
OMIM616808   
Gene and transcription
Genbank (Entrez)AK001098 AK002148 AK096142 AK098062 AL137694
RefSeq transcript (Entrez)NM_001308277 NM_018381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHFL
Alternative Splicing GalleryENSG00000130813
Gene ExpressionSHFL [ NCBI-GEO ]   SHFL [ EBI - ARRAY_EXPRESS ]   SHFL [ SEEK ]   SHFL [ MEM ]
Gene Expression Viewer (FireBrowse)SHFL [ Firebrowse - Broad ]
GenevisibleExpression of SHFL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55337
GTEX Portal (Tissue expression)SHFL
Human Protein AtlasENSG00000130813-SHFL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUL5
Splice isoforms : SwissVarQ9NUL5
PhosPhoSitePlusQ9NUL5
Domains : Interpro (EBI)SHFL   
Domain families : Pfam (Sanger)UPF0515 (PF15135)   
Domain families : Pfam (NCBI)pfam15135   
Conserved Domain (NCBI)SHFL
Blocks (Seattle)SHFL
SuperfamilyQ9NUL5
Human Protein Atlas [tissue]ENSG00000130813-SHFL [tissue]
Peptide AtlasQ9NUL5
HPRD07747
IPIIPI00413853   IPI00167592   IPI00642518   IPI00383563   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUL5
IntAct (EBI)Q9NUL5
BioGRIDSHFL
STRING (EMBL)SHFL
ZODIACSHFL
Ontologies - Pathways
QuickGOQ9NUL5
Ontology : AmiGOP-body  RNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  regulation of translational termination  viral replication complex  response to type I interferon  response to interferon-gamma  response to type III interferon  response to interferon-beta  ribosome binding  negative regulation of viral genome replication  defense response to virus  defense response to virus  viral translational frameshifting  sequence-specific mRNA binding  negative regulation of translational frameshifting  
Ontology : EGO-EBIP-body  RNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  regulation of translational termination  viral replication complex  response to type I interferon  response to interferon-gamma  response to type III interferon  response to interferon-beta  ribosome binding  negative regulation of viral genome replication  defense response to virus  defense response to virus  viral translational frameshifting  sequence-specific mRNA binding  negative regulation of translational frameshifting  
NDEx NetworkSHFL
Atlas of Cancer Signalling NetworkSHFL
Wikipedia pathwaysSHFL
Orthology - Evolution
OrthoDB55337
GeneTree (enSembl)ENSG00000130813
Phylogenetic Trees/Animal Genes : TreeFamSHFL
HOGENOMQ9NUL5
Homologs : HomoloGeneSHFL
Homology/Alignments : Family Browser (UCSC)SHFL
Gene fusions - Rearrangements
Fusion : QuiverSHFL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHFL [hg38]
dbVarSHFL
ClinVarSHFL
MonarchSHFL
1000_GenomesSHFL 
Exome Variant ServerSHFL
GNOMAD BrowserENSG00000130813
Varsome BrowserSHFL
Genomic Variants (DGV)SHFL [DGVbeta]
DECIPHERSHFL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHFL 
Mutations
ICGC Data PortalSHFL 
TCGA Data PortalSHFL 
Broad Tumor PortalSHFL
OASIS PortalSHFL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSHFL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHFL
DgiDB (Drug Gene Interaction Database)SHFL
DoCM (Curated mutations)SHFL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHFL (select a term)
intoGenSHFL
Cancer3DSHFL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616808   
Orphanet
DisGeNETSHFL
MedgenSHFL
Genetic Testing Registry SHFL
NextProtQ9NUL5 [Medical]
GENETestsSHFL
Target ValidationSHFL
Huge Navigator SHFL [HugePedia]
ClinGenSHFL
Clinical trials, drugs, therapy
MyCancerGenomeSHFL
Protein Interactions : CTD
Pharm GKB GenePA162378809
Clinical trialSHFL
Miscellaneous
canSAR (ICR)SHFL (select the gene name)
HarmonizomeSHFL
DataMed IndexSHFL
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHFL
EVEXSHFL
GoPubMedSHFL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:44:12 CET 2020

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