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SHISA2 (shisa family member 2)

Identity

Alias (NCBI)C13orf13
PRO28631
TMEM46
WGAR9166
bA398O19.2
hShisa
HGNC (Hugo) SHISA2
HGNC Alias symbbA398O19.2
PRO28631
WGAR9166
hShisa
HGNC Previous nameC13orf13
 TMEM46
HGNC Previous namechromosome 13 open reading frame 13
 transmembrane protein 46
 shisa homolog 2 (Xenopus laevis)
LocusID (NCBI) 387914
Atlas_Id 73225
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 26044597 and ends at 26052016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SHISA2   20366
Cards
Entrez_Gene (NCBI)SHISA2    shisa family member 2
AliasesC13orf13; PRO28631; TMEM46; WGAR9166; 
bA398O19.2; hShisa
GeneCards (Weizmann)SHISA2
Ensembl hg19 (Hinxton)ENSG00000180730 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180730 [Gene_View]  ENSG00000180730 [Sequence]  chr13:26044597-26052016 [Contig_View]  SHISA2 [Vega]
ICGC DataPortalENSG00000180730
TCGA cBioPortalSHISA2
AceView (NCBI)SHISA2
Genatlas (Paris)SHISA2
SOURCE (Princeton)SHISA2
Genetics Home Reference (NIH)SHISA2
Genomic and cartography
GoldenPath hg38 (UCSC)SHISA2  -     chr13:26044597-26052016 -  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISA2  -     13q12.13   [Description]    (hg19-Feb_2009)
GoldenPathSHISA2 - 13q12.13 [CytoView hg19]  SHISA2 - 13q12.13 [CytoView hg38]
ImmunoBaseENSG00000180730
Genome Data Viewer NCBISHISA2 [Mapview hg19]  
OMIM617324   
Gene and transcription
Genbank (Entrez)AY358775 BC132898 BC137092
RefSeq transcript (Entrez)NM_001007538
Consensus coding sequences : CCDS (NCBI)SHISA2
Gene ExpressionSHISA2 [ NCBI-GEO ]   SHISA2 [ EBI - ARRAY_EXPRESS ]   SHISA2 [ SEEK ]   SHISA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA2 [ Firebrowse - Broad ]
GenevisibleExpression of SHISA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387914
GTEX Portal (Tissue expression)SHISA2
Human Protein AtlasENSG00000180730-SHISA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWI4
PhosPhoSitePlusQ6UWI4
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA2
SuperfamilyQ6UWI4
AlphaFold pdb e-kbQ6UWI4   
Human Protein Atlas [tissue]ENSG00000180730-SHISA2 [tissue]
HPRD16589
Protein Interaction databases
DIP (DOE-UCLA)Q6UWI4
IntAct (EBI)Q6UWI4
BioGRIDSHISA2
STRING (EMBL)SHISA2
ZODIACSHISA2
Ontologies - Pathways
QuickGOQ6UWI4
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organism development  integral component of membrane  negative regulation of Wnt signaling pathway  negative regulation of fibroblast growth factor receptor signaling pathway  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organism development  integral component of membrane  negative regulation of Wnt signaling pathway  negative regulation of fibroblast growth factor receptor signaling pathway  
NDEx NetworkSHISA2
Atlas of Cancer Signalling NetworkSHISA2
Wikipedia pathwaysSHISA2
Orthology - Evolution
OrthoDB387914
GeneTree (enSembl)ENSG00000180730
Phylogenetic Trees/Animal Genes : TreeFamSHISA2
Homologs : HomoloGeneSHISA2
Homology/Alignments : Family Browser (UCSC)SHISA2
Gene fusions - Rearrangements
Fusion : QuiverSHISA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA2
dbVarSHISA2
ClinVarSHISA2
MonarchSHISA2
1000_GenomesSHISA2 
Exome Variant ServerSHISA2
GNOMAD BrowserENSG00000180730
Varsome BrowserSHISA2
ACMGSHISA2 variants
VarityQ6UWI4
Genomic Variants (DGV)SHISA2 [DGVbeta]
DECIPHERSHISA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISA2 
Mutations
ICGC Data PortalSHISA2 
TCGA Data PortalSHISA2 
Broad Tumor PortalSHISA2
OASIS PortalSHISA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSHISA2
Mutations and Diseases : HGMDSHISA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSHISA2
DgiDB (Drug Gene Interaction Database)SHISA2
DoCM (Curated mutations)SHISA2
CIViC (Clinical Interpretations of Variants in Cancer)SHISA2
Cancer3DSHISA2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617324   
Orphanet
DisGeNETSHISA2
MedgenSHISA2
Genetic Testing Registry SHISA2
NextProtQ6UWI4 [Medical]
GENETestsSHISA2
Target ValidationSHISA2
Huge Navigator SHISA2 [HugePedia]
ClinGenSHISA2
Clinical trials, drugs, therapy
MyCancerGenomeSHISA2
Protein Interactions : CTDSHISA2
Pharm GKB GenePA162403292
PharosQ6UWI4
Clinical trialSHISA2
Miscellaneous
canSAR (ICR)SHISA2
HarmonizomeSHISA2
DataMed IndexSHISA2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSHISA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:30 CEST 2021

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