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SHISA2 (shisa family member 2)

Identity

Alias_namesC13orf13
TMEM46
chromosome 13 open reading frame 13
transmembrane protein 46
shisa homolog 2 (Xenopus laevis)
Alias_symbol (synonym)bA398O19.2
PRO28631
WGAR9166
hShisa
Other alias
HGNC (Hugo) SHISA2
LocusID (NCBI) 387914
Atlas_Id 73225
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 26618735 and ends at 26625198 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA2   20366
Cards
Entrez_Gene (NCBI)SHISA2  387914  shisa family member 2
AliasesC13orf13; PRO28631; TMEM46; WGAR9166; 
bA398O19.2; hShisa
GeneCards (Weizmann)SHISA2
Ensembl hg19 (Hinxton)ENSG00000180730 [Gene_View]  chr13:26618735-26625198 [Contig_View]  SHISA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180730 [Gene_View]  chr13:26618735-26625198 [Contig_View]  SHISA2 [Vega]
ICGC DataPortalENSG00000180730
TCGA cBioPortalSHISA2
AceView (NCBI)SHISA2
Genatlas (Paris)SHISA2
WikiGenes387914
SOURCE (Princeton)SHISA2
Genetics Home Reference (NIH)SHISA2
Genomic and cartography
GoldenPath hg19 (UCSC)SHISA2  -     chr13:26618735-26625198 -  13q12.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SHISA2  -     13q12.13   [Description]    (hg38-Dec_2013)
EnsemblSHISA2 - 13q12.13 [CytoView hg19]  SHISA2 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBISHISA2 [Mapview hg19]  SHISA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358775 BC132898 BC137092 HG505473
RefSeq transcript (Entrez)NM_001007538
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)SHISA2
Cluster EST : UnigeneHs.433791 [ NCBI ]
CGAP (NCI)Hs.433791
Alternative Splicing GalleryENSG00000180730
Gene ExpressionSHISA2 [ NCBI-GEO ]   SHISA2 [ EBI - ARRAY_EXPRESS ]   SHISA2 [ SEEK ]   SHISA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387914
GTEX Portal (Tissue expression)SHISA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWI4
Splice isoforms : SwissVarQ6UWI4
PhosPhoSitePlusQ6UWI4
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA2
DMDM Disease mutations387914
Blocks (Seattle)SHISA2
SuperfamilyQ6UWI4
Human Protein AtlasENSG00000180730
Peptide AtlasQ6UWI4
HPRD16589
IPIIPI00244512   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWI4
IntAct (EBI)Q6UWI4
FunCoupENSG00000180730
BioGRIDSHISA2
STRING (EMBL)SHISA2
ZODIACSHISA2
Ontologies - Pathways
QuickGOQ6UWI4
Ontology : AmiGOendoplasmic reticulum membrane  multicellular organismal development  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  multicellular organismal development  integral component of membrane  
NDEx NetworkSHISA2
Atlas of Cancer Signalling NetworkSHISA2
Wikipedia pathwaysSHISA2
Orthology - Evolution
OrthoDB387914
GeneTree (enSembl)ENSG00000180730
Phylogenetic Trees/Animal Genes : TreeFamSHISA2
HOVERGENQ6UWI4
HOGENOMQ6UWI4
Homologs : HomoloGeneSHISA2
Homology/Alignments : Family Browser (UCSC)SHISA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA2
dbVarSHISA2
ClinVarSHISA2
1000_GenomesSHISA2 
Exome Variant ServerSHISA2
ExAC (Exome Aggregation Consortium)SHISA2 (select the gene name)
Genetic variants : HAPMAP387914
Genomic Variants (DGV)SHISA2 [DGVbeta]
DECIPHER (Syndromes)13:26618735-26625198  ENSG00000180730
CONAN: Copy Number AnalysisSHISA2 
Mutations
ICGC Data PortalSHISA2 
TCGA Data PortalSHISA2 
Broad Tumor PortalSHISA2
OASIS PortalSHISA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA2
DgiDB (Drug Gene Interaction Database)SHISA2
DoCM (Curated mutations)SHISA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA2 (select a term)
intoGenSHISA2
Cancer3DSHISA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSHISA2
Genetic Testing Registry SHISA2
NextProtQ6UWI4 [Medical]
TSGene387914
GENETestsSHISA2
Huge Navigator SHISA2 [HugePedia]
snp3D : Map Gene to Disease387914
BioCentury BCIQSHISA2
ClinGenSHISA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387914
Chemical/Pharm GKB GenePA162403292
Clinical trialSHISA2
Miscellaneous
canSAR (ICR)SHISA2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA2
EVEXSHISA2
GoPubMedSHISA2
iHOPSHISA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:08 CET 2017

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