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SHISA3 (shisa family member 3)

Identity

Alias_namesshisa homolog 3 (Xenopus laevis)
Alias_symbol (synonym)hShisa3
Other alias
HGNC (Hugo) SHISA3
LocusID (NCBI) 152573
Atlas_Id 54915
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 42399856 and ends at 42404504 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA3   25159
Cards
Entrez_Gene (NCBI)SHISA3  152573  shisa family member 3
AliaseshShisa3
GeneCards (Weizmann)SHISA3
Ensembl hg19 (Hinxton)ENSG00000178343 [Gene_View]  chr4:42399856-42404504 [Contig_View]  SHISA3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178343 [Gene_View]  chr4:42399856-42404504 [Contig_View]  SHISA3 [Vega]
ICGC DataPortalENSG00000178343
TCGA cBioPortalSHISA3
AceView (NCBI)SHISA3
Genatlas (Paris)SHISA3
WikiGenes152573
SOURCE (Princeton)SHISA3
Genetics Home Reference (NIH)SHISA3
Genomic and cartography
GoldenPath hg19 (UCSC)SHISA3  -     chr4:42399856-42404504 +  4p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SHISA3  -     4p13   [Description]    (hg38-Dec_2013)
EnsemblSHISA3 - 4p13 [CytoView hg19]  SHISA3 - 4p13 [CytoView hg38]
Mapping of homologs : NCBISHISA3 [Mapview hg19]  SHISA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC012029 BC127690 BC127691
RefSeq transcript (Entrez)NM_001080505
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)SHISA3
Cluster EST : UnigeneHs.370904 [ NCBI ]
CGAP (NCI)Hs.370904
Alternative Splicing GalleryENSG00000178343
Gene ExpressionSHISA3 [ NCBI-GEO ]   SHISA3 [ EBI - ARRAY_EXPRESS ]   SHISA3 [ SEEK ]   SHISA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152573
GTEX Portal (Tissue expression)SHISA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJX4
Splice isoforms : SwissVarA0PJX4
PhosPhoSitePlusA0PJX4
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA3
DMDM Disease mutations152573
Blocks (Seattle)SHISA3
SuperfamilyA0PJX4
Human Protein AtlasENSG00000178343
Peptide AtlasA0PJX4
IPIIPI00455600   
Protein Interaction databases
DIP (DOE-UCLA)A0PJX4
IntAct (EBI)A0PJX4
FunCoupENSG00000178343
BioGRIDSHISA3
STRING (EMBL)SHISA3
ZODIACSHISA3
Ontologies - Pathways
QuickGOA0PJX4
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  multicellular organism development  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  multicellular organism development  integral component of membrane  
NDEx NetworkSHISA3
Atlas of Cancer Signalling NetworkSHISA3
Wikipedia pathwaysSHISA3
Orthology - Evolution
OrthoDB152573
GeneTree (enSembl)ENSG00000178343
Phylogenetic Trees/Animal Genes : TreeFamSHISA3
HOVERGENA0PJX4
HOGENOMA0PJX4
Homologs : HomoloGeneSHISA3
Homology/Alignments : Family Browser (UCSC)SHISA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA3
dbVarSHISA3
ClinVarSHISA3
1000_GenomesSHISA3 
Exome Variant ServerSHISA3
ExAC (Exome Aggregation Consortium)SHISA3 (select the gene name)
Genetic variants : HAPMAP152573
Genomic Variants (DGV)SHISA3 [DGVbeta]
DECIPHER (Syndromes)4:42399856-42404504  ENSG00000178343
CONAN: Copy Number AnalysisSHISA3 
Mutations
ICGC Data PortalSHISA3 
TCGA Data PortalSHISA3 
Broad Tumor PortalSHISA3
OASIS PortalSHISA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA3
DgiDB (Drug Gene Interaction Database)SHISA3
DoCM (Curated mutations)SHISA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA3 (select a term)
intoGenSHISA3
Cancer3DSHISA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSHISA3
Genetic Testing Registry SHISA3
NextProtA0PJX4 [Medical]
TSGene152573
GENETestsSHISA3
Huge Navigator SHISA3 [HugePedia]
snp3D : Map Gene to Disease152573
BioCentury BCIQSHISA3
ClinGenSHISA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152573
Chemical/Pharm GKB GenePA162403293
Clinical trialSHISA3
Miscellaneous
canSAR (ICR)SHISA3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA3
EVEXSHISA3
GoPubMedSHISA3
iHOPSHISA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:12 CET 2017

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