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SHISA4 (shisa family member 4)

Identity

Alias (NCBI)C1orf40
TMEM58
HGNC (Hugo) SHISA4
HGNC Alias symbhShisa4
HGNC Previous nameC1orf40
 TMEM58
HGNC Previous namechromosome 1 open reading frame 40
 transmembrane protein 58
 shisa homolog 4 (Xenopus laevis)
LocusID (NCBI) 149345
Atlas_Id 73226
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201888898 and ends at 201892587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SHISA4 (1q32.1) / SHISA4 (1q32.1)TYK2 (19p13.2) / SHISA4 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SHISA4   27139
Cards
Entrez_Gene (NCBI)SHISA4    shisa family member 4
AliasesC1orf40; TMEM58
GeneCards (Weizmann)SHISA4
Ensembl hg19 (Hinxton)ENSG00000198892 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198892 [Gene_View]  ENSG00000198892 [Sequence]  chr1:201888898-201892587 [Contig_View]  SHISA4 [Vega]
ICGC DataPortalENSG00000198892
TCGA cBioPortalSHISA4
AceView (NCBI)SHISA4
Genatlas (Paris)SHISA4
SOURCE (Princeton)SHISA4
Genetics Home Reference (NIH)SHISA4
Genomic and cartography
GoldenPath hg38 (UCSC)SHISA4  -     chr1:201888898-201892587 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISA4  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathSHISA4 - 1q32.1 [CytoView hg19]  SHISA4 - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000198892
Genome Data Viewer NCBISHISA4 [Mapview hg19]  
OMIM617326   
Gene and transcription
Genbank (Entrez)AK294106 AK311191 AK316312 AY358589 BC009558
RefSeq transcript (Entrez)NM_198149
Consensus coding sequences : CCDS (NCBI)SHISA4
Gene ExpressionSHISA4 [ NCBI-GEO ]   SHISA4 [ EBI - ARRAY_EXPRESS ]   SHISA4 [ SEEK ]   SHISA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA4 [ Firebrowse - Broad ]
GenevisibleExpression of SHISA4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149345
GTEX Portal (Tissue expression)SHISA4
Human Protein AtlasENSG00000198892-SHISA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DD7
PhosPhoSitePlusQ96DD7
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA4
SuperfamilyQ96DD7
AlphaFold pdb e-kbQ96DD7   
Human Protein Atlas [tissue]ENSG00000198892-SHISA4 [tissue]
HPRD12729
Protein Interaction databases
DIP (DOE-UCLA)Q96DD7
IntAct (EBI)Q96DD7
BioGRIDSHISA4
STRING (EMBL)SHISA4
ZODIACSHISA4
Ontologies - Pathways
QuickGOQ96DD7
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkSHISA4
Atlas of Cancer Signalling NetworkSHISA4
Wikipedia pathwaysSHISA4
Orthology - Evolution
OrthoDB149345
GeneTree (enSembl)ENSG00000198892
Phylogenetic Trees/Animal Genes : TreeFamSHISA4
Homologs : HomoloGeneSHISA4
Homology/Alignments : Family Browser (UCSC)SHISA4
Gene fusions - Rearrangements
Fusion : QuiverSHISA4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA4
dbVarSHISA4
ClinVarSHISA4
MonarchSHISA4
1000_GenomesSHISA4 
Exome Variant ServerSHISA4
GNOMAD BrowserENSG00000198892
Varsome BrowserSHISA4
ACMGSHISA4 variants
VarityQ96DD7
Genomic Variants (DGV)SHISA4 [DGVbeta]
DECIPHERSHISA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISA4 
Mutations
ICGC Data PortalSHISA4 
TCGA Data PortalSHISA4 
Broad Tumor PortalSHISA4
OASIS PortalSHISA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSHISA4
Mutations and Diseases : HGMDSHISA4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSHISA4
DgiDB (Drug Gene Interaction Database)SHISA4
DoCM (Curated mutations)SHISA4
CIViC (Clinical Interpretations of Variants in Cancer)SHISA4
Cancer3DSHISA4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617326   
Orphanet
DisGeNETSHISA4
MedgenSHISA4
Genetic Testing Registry SHISA4
NextProtQ96DD7 [Medical]
GENETestsSHISA4
Target ValidationSHISA4
Huge Navigator SHISA4 [HugePedia]
ClinGenSHISA4
Clinical trials, drugs, therapy
MyCancerGenomeSHISA4
Protein Interactions : CTDSHISA4
Pharm GKB GenePA162403294
PharosQ96DD7
Clinical trialSHISA4
Miscellaneous
canSAR (ICR)SHISA4
HarmonizomeSHISA4
DataMed IndexSHISA4
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSHISA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:30 CEST 2021

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