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SHISA4 (shisa family member 4)

Identity

Alias_namesC1orf40
TMEM58
chromosome 1 open reading frame 40
transmembrane protein 58
shisa homolog 4 (Xenopus laevis)
Alias_symbol (synonym)hShisa4
Other alias
HGNC (Hugo) SHISA4
LocusID (NCBI) 149345
Atlas_Id 73226
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201888677 and ends at 201892587 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SHISA4 (1q32.1) / SHISA4 (1q32.1)TYK2 (19p13.2) / SHISA4 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA4   27139
Cards
Entrez_Gene (NCBI)SHISA4  149345  shisa family member 4
AliasesC1orf40; TMEM58
GeneCards (Weizmann)SHISA4
Ensembl hg19 (Hinxton)ENSG00000198892 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198892 [Gene_View]  chr1:201888677-201892587 [Contig_View]  SHISA4 [Vega]
ICGC DataPortalENSG00000198892
TCGA cBioPortalSHISA4
AceView (NCBI)SHISA4
Genatlas (Paris)SHISA4
WikiGenes149345
SOURCE (Princeton)SHISA4
Genetics Home Reference (NIH)SHISA4
Genomic and cartography
GoldenPath hg38 (UCSC)SHISA4  -     chr1:201888677-201892587 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISA4  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblSHISA4 - 1q32.1 [CytoView hg19]  SHISA4 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBISHISA4 [Mapview hg19]  SHISA4 [Mapview hg38]
OMIM617326   
Gene and transcription
Genbank (Entrez)AK294106 AK311191 AK316312 AY358589 BC009558
RefSeq transcript (Entrez)NM_198149
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISA4
Cluster EST : UnigeneHs.632471 [ NCBI ]
CGAP (NCI)Hs.632471
Alternative Splicing GalleryENSG00000198892
Gene ExpressionSHISA4 [ NCBI-GEO ]   SHISA4 [ EBI - ARRAY_EXPRESS ]   SHISA4 [ SEEK ]   SHISA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149345
GTEX Portal (Tissue expression)SHISA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DD7
Splice isoforms : SwissVarQ96DD7
PhosPhoSitePlusQ96DD7
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA4
DMDM Disease mutations149345
Blocks (Seattle)SHISA4
SuperfamilyQ96DD7
Human Protein AtlasENSG00000198892
Peptide AtlasQ96DD7
HPRD12729
IPIIPI00514190   
Protein Interaction databases
DIP (DOE-UCLA)Q96DD7
IntAct (EBI)Q96DD7
FunCoupENSG00000198892
BioGRIDSHISA4
STRING (EMBL)SHISA4
ZODIACSHISA4
Ontologies - Pathways
QuickGOQ96DD7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSHISA4
Atlas of Cancer Signalling NetworkSHISA4
Wikipedia pathwaysSHISA4
Orthology - Evolution
OrthoDB149345
GeneTree (enSembl)ENSG00000198892
Phylogenetic Trees/Animal Genes : TreeFamSHISA4
HOVERGENQ96DD7
HOGENOMQ96DD7
Homologs : HomoloGeneSHISA4
Homology/Alignments : Family Browser (UCSC)SHISA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA4
dbVarSHISA4
ClinVarSHISA4
1000_GenomesSHISA4 
Exome Variant ServerSHISA4
ExAC (Exome Aggregation Consortium)SHISA4 (select the gene name)
Genetic variants : HAPMAP149345
Genomic Variants (DGV)SHISA4 [DGVbeta]
DECIPHERSHISA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISA4 
Mutations
ICGC Data PortalSHISA4 
TCGA Data PortalSHISA4 
Broad Tumor PortalSHISA4
OASIS PortalSHISA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA4
DgiDB (Drug Gene Interaction Database)SHISA4
DoCM (Curated mutations)SHISA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA4 (select a term)
intoGenSHISA4
Cancer3DSHISA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617326   
Orphanet
MedgenSHISA4
Genetic Testing Registry SHISA4
NextProtQ96DD7 [Medical]
TSGene149345
GENETestsSHISA4
Target ValidationSHISA4
Huge Navigator SHISA4 [HugePedia]
snp3D : Map Gene to Disease149345
BioCentury BCIQSHISA4
ClinGenSHISA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149345
Chemical/Pharm GKB GenePA162403294
Clinical trialSHISA4
Miscellaneous
canSAR (ICR)SHISA4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA4
EVEXSHISA4
GoPubMedSHISA4
iHOPSHISA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:47 CEST 2017

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