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SHISA6 (shisa family member 6)

Identity

Alias_namesshisa homolog 6 (Xenopus laevis)
Alias_symbol (synonym)FLJ45455
Other alias-
HGNC (Hugo) SHISA6
LocusID (NCBI) 388336
Atlas_Id 73227
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 11241423 and ends at 11564063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SHISA6 (17p12) / HDHD2 (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA6   34491
Cards
Entrez_Gene (NCBI)SHISA6  388336  shisa family member 6
Aliases
GeneCards (Weizmann)SHISA6
Ensembl hg19 (Hinxton)ENSG00000188803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188803 [Gene_View]  chr17:11241423-11564063 [Contig_View]  SHISA6 [Vega]
ICGC DataPortalENSG00000188803
TCGA cBioPortalSHISA6
AceView (NCBI)SHISA6
Genatlas (Paris)SHISA6
WikiGenes388336
SOURCE (Princeton)SHISA6
Genetics Home Reference (NIH)SHISA6
Genomic and cartography
GoldenPath hg38 (UCSC)SHISA6  -     chr17:11241423-11564063 +  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISA6  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblSHISA6 - 17p12 [CytoView hg19]  SHISA6 - 17p12 [CytoView hg38]
Mapping of homologs : NCBISHISA6 [Mapview hg19]  SHISA6 [Mapview hg38]
OMIM617327   
Gene and transcription
Genbank (Entrez)AK094349 AK095052 AK127379 AK128003 AL110201
RefSeq transcript (Entrez)NM_001173461 NM_001173462 NM_175903 NM_207386
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISA6
Cluster EST : UnigeneHs.672782 [ NCBI ]
CGAP (NCI)Hs.672782
Alternative Splicing GalleryENSG00000188803
Gene ExpressionSHISA6 [ NCBI-GEO ]   SHISA6 [ EBI - ARRAY_EXPRESS ]   SHISA6 [ SEEK ]   SHISA6 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388336
GTEX Portal (Tissue expression)SHISA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSJ9
Splice isoforms : SwissVarQ6ZSJ9
PhosPhoSitePlusQ6ZSJ9
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA6
DMDM Disease mutations388336
Blocks (Seattle)SHISA6
SuperfamilyQ6ZSJ9
Human Protein AtlasENSG00000188803
Peptide AtlasQ6ZSJ9
HPRD13507
IPIIPI00410457   IPI00939232   IPI00607704   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSJ9
IntAct (EBI)Q6ZSJ9
FunCoupENSG00000188803
BioGRIDSHISA6
STRING (EMBL)SHISA6
ZODIACSHISA6
Ontologies - Pathways
QuickGOQ6ZSJ9
Ontology : AmiGOAMPA glutamate receptor complex  synapse  regulation of short-term neuronal synaptic plasticity  
Ontology : EGO-EBIAMPA glutamate receptor complex  synapse  regulation of short-term neuronal synaptic plasticity  
NDEx NetworkSHISA6
Atlas of Cancer Signalling NetworkSHISA6
Wikipedia pathwaysSHISA6
Orthology - Evolution
OrthoDB388336
GeneTree (enSembl)ENSG00000188803
Phylogenetic Trees/Animal Genes : TreeFamSHISA6
HOVERGENQ6ZSJ9
HOGENOMQ6ZSJ9
Homologs : HomoloGeneSHISA6
Homology/Alignments : Family Browser (UCSC)SHISA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA6
dbVarSHISA6
ClinVarSHISA6
1000_GenomesSHISA6 
Exome Variant ServerSHISA6
ExAC (Exome Aggregation Consortium)SHISA6 (select the gene name)
Genetic variants : HAPMAP388336
Genomic Variants (DGV)SHISA6 [DGVbeta]
DECIPHERSHISA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISA6 
Mutations
ICGC Data PortalSHISA6 
TCGA Data PortalSHISA6 
Broad Tumor PortalSHISA6
OASIS PortalSHISA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA6
DgiDB (Drug Gene Interaction Database)SHISA6
DoCM (Curated mutations)SHISA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA6 (select a term)
intoGenSHISA6
Cancer3DSHISA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617327   
Orphanet
MedgenSHISA6
Genetic Testing Registry SHISA6
NextProtQ6ZSJ9 [Medical]
TSGene388336
GENETestsSHISA6
Target ValidationSHISA6
Huge Navigator SHISA6 [HugePedia]
snp3D : Map Gene to Disease388336
BioCentury BCIQSHISA6
ClinGenSHISA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388336
Chemical/Pharm GKB GenePA165432740
Clinical trialSHISA6
Miscellaneous
canSAR (ICR)SHISA6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA6
EVEXSHISA6
GoPubMedSHISA6
iHOPSHISA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:47 CEST 2017

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