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SHISA7 (shisa family member 7)

Identity

Alias_namesshisa homolog 7 (Xenopus laevis)
Other alias-
HGNC (Hugo) SHISA7
LocusID (NCBI) 729956
Atlas_Id 73228
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55428738 and ends at 55442863 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA7   35409
Cards
Entrez_Gene (NCBI)SHISA7  729956  shisa family member 7
Aliases
GeneCards (Weizmann)SHISA7
Ensembl hg19 (Hinxton)ENSG00000187902 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187902 [Gene_View]  chr19:55428738-55442863 [Contig_View]  SHISA7 [Vega]
ICGC DataPortalENSG00000187902
TCGA cBioPortalSHISA7
AceView (NCBI)SHISA7
Genatlas (Paris)SHISA7
WikiGenes729956
SOURCE (Princeton)SHISA7
Genetics Home Reference (NIH)SHISA7
Genomic and cartography
GoldenPath hg38 (UCSC)SHISA7  -     chr19:55428738-55442863 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHISA7  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblSHISA7 - 19q13.42 [CytoView hg19]  SHISA7 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBISHISA7 [Mapview hg19]  SHISA7 [Mapview hg38]
OMIM617328   
Gene and transcription
Genbank (Entrez)AK091660 AK094959 AK127223 AL831832 BC093900
RefSeq transcript (Entrez)NM_001145176 NM_175908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHISA7
Cluster EST : UnigeneHs.6664 [ NCBI ]
CGAP (NCI)Hs.6664
Alternative Splicing GalleryENSG00000187902
Gene ExpressionSHISA7 [ NCBI-GEO ]   SHISA7 [ EBI - ARRAY_EXPRESS ]   SHISA7 [ SEEK ]   SHISA7 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729956
GTEX Portal (Tissue expression)SHISA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NL88   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NL88  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NL88
Splice isoforms : SwissVarA6NL88
PhosPhoSitePlusA6NL88
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA7
DMDM Disease mutations729956
Blocks (Seattle)SHISA7
SuperfamilyA6NL88
Human Protein AtlasENSG00000187902
Peptide AtlasA6NL88
IPIIPI00917604   IPI00395759   IPI00385810   IPI00917043   
Protein Interaction databases
DIP (DOE-UCLA)A6NL88
IntAct (EBI)A6NL88
FunCoupENSG00000187902
BioGRIDSHISA7
STRING (EMBL)SHISA7
ZODIACSHISA7
Ontologies - Pathways
QuickGOA6NL88
Ontology : AmiGOAMPA glutamate receptor complex  synapse  regulation of short-term neuronal synaptic plasticity  
Ontology : EGO-EBIAMPA glutamate receptor complex  synapse  regulation of short-term neuronal synaptic plasticity  
NDEx NetworkSHISA7
Atlas of Cancer Signalling NetworkSHISA7
Wikipedia pathwaysSHISA7
Orthology - Evolution
OrthoDB729956
GeneTree (enSembl)ENSG00000187902
Phylogenetic Trees/Animal Genes : TreeFamSHISA7
HOVERGENA6NL88
HOGENOMA6NL88
Homologs : HomoloGeneSHISA7
Homology/Alignments : Family Browser (UCSC)SHISA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA7
dbVarSHISA7
ClinVarSHISA7
1000_GenomesSHISA7 
Exome Variant ServerSHISA7
ExAC (Exome Aggregation Consortium)SHISA7 (select the gene name)
Genetic variants : HAPMAP729956
Genomic Variants (DGV)SHISA7 [DGVbeta]
DECIPHERSHISA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHISA7 
Mutations
ICGC Data PortalSHISA7 
TCGA Data PortalSHISA7 
Broad Tumor PortalSHISA7
OASIS PortalSHISA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA7
DgiDB (Drug Gene Interaction Database)SHISA7
DoCM (Curated mutations)SHISA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA7 (select a term)
intoGenSHISA7
Cancer3DSHISA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617328   
Orphanet
MedgenSHISA7
Genetic Testing Registry SHISA7
NextProtA6NL88 [Medical]
TSGene729956
GENETestsSHISA7
Target ValidationSHISA7
Huge Navigator SHISA7 [HugePedia]
snp3D : Map Gene to Disease729956
BioCentury BCIQSHISA7
ClinGenSHISA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729956
Chemical/Pharm GKB GenePA165394299
Clinical trialSHISA7
Miscellaneous
canSAR (ICR)SHISA7 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA7
EVEXSHISA7
GoPubMedSHISA7
iHOPSHISA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:43 CEST 2017

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