Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHISA8 (shisa family member 8)

Identity

Alias_namesC22orf17
chromosome 22 open reading frame 17
shisa homolog 8 (Xenopus laevis)
Alias_symbol (synonym)Orf26
Other alias
HGNC (Hugo) SHISA8
LocusID (NCBI) 440829
Atlas_Id 73229
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42305558 and ends at 42310671 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA8   18351
Cards
Entrez_Gene (NCBI)SHISA8  440829  shisa family member 8
AliasesC22orf17; Orf26
GeneCards (Weizmann)SHISA8
Ensembl hg19 (Hinxton)ENSG00000234965 [Gene_View]  chr22:42305558-42310671 [Contig_View]  SHISA8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234965 [Gene_View]  chr22:42305558-42310671 [Contig_View]  SHISA8 [Vega]
ICGC DataPortalENSG00000234965
TCGA cBioPortalSHISA8
AceView (NCBI)SHISA8
Genatlas (Paris)SHISA8
WikiGenes440829
SOURCE (Princeton)SHISA8
Genetics Home Reference (NIH)SHISA8
Genomic and cartography
GoldenPath hg19 (UCSC)SHISA8  -     chr22:42305558-42310671 -  22q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SHISA8  -     22q13.2   [Description]    (hg38-Dec_2013)
EnsemblSHISA8 - 22q13.2 [CytoView hg19]  SHISA8 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISHISA8 [Mapview hg19]  SHISA8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI763350 CR748983
RefSeq transcript (Entrez)NM_001207020
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SHISA8
Cluster EST : UnigeneHs.526704 [ NCBI ]
CGAP (NCI)Hs.526704
Alternative Splicing GalleryENSG00000234965
Gene ExpressionSHISA8 [ NCBI-GEO ]   SHISA8 [ EBI - ARRAY_EXPRESS ]   SHISA8 [ SEEK ]   SHISA8 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440829
GTEX Portal (Tissue expression)SHISA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtB8ZZ34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB8ZZ34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB8ZZ34
Splice isoforms : SwissVarB8ZZ34
PhosPhoSitePlusB8ZZ34
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA8
DMDM Disease mutations440829
Blocks (Seattle)SHISA8
SuperfamilyB8ZZ34
Human Protein AtlasENSG00000234965
Peptide AtlasB8ZZ34
IPIIPI00455521   
Protein Interaction databases
DIP (DOE-UCLA)B8ZZ34
IntAct (EBI)B8ZZ34
FunCoupENSG00000234965
BioGRIDSHISA8
STRING (EMBL)SHISA8
ZODIACSHISA8
Ontologies - Pathways
QuickGOB8ZZ34
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSHISA8
Atlas of Cancer Signalling NetworkSHISA8
Wikipedia pathwaysSHISA8
Orthology - Evolution
OrthoDB440829
GeneTree (enSembl)ENSG00000234965
Phylogenetic Trees/Animal Genes : TreeFamSHISA8
HOVERGENB8ZZ34
HOGENOMB8ZZ34
Homologs : HomoloGeneSHISA8
Homology/Alignments : Family Browser (UCSC)SHISA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA8
dbVarSHISA8
ClinVarSHISA8
1000_GenomesSHISA8 
Exome Variant ServerSHISA8
ExAC (Exome Aggregation Consortium)SHISA8 (select the gene name)
Genetic variants : HAPMAP440829
Genomic Variants (DGV)SHISA8 [DGVbeta]
DECIPHER (Syndromes)22:42305558-42310671  ENSG00000234965
CONAN: Copy Number AnalysisSHISA8 
Mutations
ICGC Data PortalSHISA8 
TCGA Data PortalSHISA8 
Broad Tumor PortalSHISA8
OASIS PortalSHISA8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSHISA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA8
DgiDB (Drug Gene Interaction Database)SHISA8
DoCM (Curated mutations)SHISA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA8 (select a term)
intoGenSHISA8
Cancer3DSHISA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSHISA8
Genetic Testing Registry SHISA8
NextProtB8ZZ34 [Medical]
TSGene440829
GENETestsSHISA8
Huge Navigator SHISA8 [HugePedia]
snp3D : Map Gene to Disease440829
BioCentury BCIQSHISA8
ClinGenSHISA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440829
Chemical/Pharm GKB GenePA165378367
Clinical trialSHISA8
Miscellaneous
canSAR (ICR)SHISA8 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA8
EVEXSHISA8
GoPubMedSHISA8
iHOPSHISA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:09 CET 2017

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