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SHISA9 (shisa family member 9)

Identity

Alias_namesshisa homolog 9 (Xenopus laevis)
Other aliasCKAMP44
HGNC (Hugo) SHISA9
LocusID (NCBI) 729993
Atlas_Id 73230
Location 16p13.12  [Link to chromosome band 16p13]
Location_base_pair Starts at 12995477 and ends at 13334273 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHISA9   37231
Cards
Entrez_Gene (NCBI)SHISA9  729993  shisa family member 9
AliasesCKAMP44
GeneCards (Weizmann)SHISA9
Ensembl hg19 (Hinxton)ENSG00000237515 [Gene_View]  chr16:12995477-13334273 [Contig_View]  SHISA9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237515 [Gene_View]  chr16:12995477-13334273 [Contig_View]  SHISA9 [Vega]
ICGC DataPortalENSG00000237515
TCGA cBioPortalSHISA9
AceView (NCBI)SHISA9
Genatlas (Paris)SHISA9
WikiGenes729993
SOURCE (Princeton)SHISA9
Genetics Home Reference (NIH)SHISA9
Genomic and cartography
GoldenPath hg19 (UCSC)SHISA9  -     chr16:12995477-13334273 +  16p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SHISA9  -     16p13.12   [Description]    (hg38-Dec_2013)
EnsemblSHISA9 - 16p13.12 [CytoView hg19]  SHISA9 - 16p13.12 [CytoView hg38]
Mapping of homologs : NCBISHISA9 [Mapview hg19]  SHISA9 [Mapview hg38]
OMIM613346   
Gene and transcription
Genbank (Entrez)AJ002784 AK000877 AK026131 AK094972 AK299610
RefSeq transcript (Entrez)NM_001145204 NM_001145205
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)SHISA9
Cluster EST : UnigeneHs.130661 [ NCBI ]
CGAP (NCI)Hs.130661
Alternative Splicing GalleryENSG00000237515
Gene ExpressionSHISA9 [ NCBI-GEO ]   SHISA9 [ EBI - ARRAY_EXPRESS ]   SHISA9 [ SEEK ]   SHISA9 [ MEM ]
Gene Expression Viewer (FireBrowse)SHISA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729993
GTEX Portal (Tissue expression)SHISA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtB4DS77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB4DS77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB4DS77
Splice isoforms : SwissVarB4DS77
PhosPhoSitePlusB4DS77
Domains : Interpro (EBI)Shisa   
Domain families : Pfam (Sanger)Shisa (PF13908)   
Domain families : Pfam (NCBI)pfam13908   
Conserved Domain (NCBI)SHISA9
DMDM Disease mutations729993
Blocks (Seattle)SHISA9
SuperfamilyB4DS77
Human Protein AtlasENSG00000237515
Peptide AtlasB4DS77
IPIIPI00956073   IPI00914526   IPI00847409   
Protein Interaction databases
DIP (DOE-UCLA)B4DS77
IntAct (EBI)B4DS77
FunCoupENSG00000237515
BioGRIDSHISA9
STRING (EMBL)SHISA9
ZODIACSHISA9
Ontologies - Pathways
QuickGOB4DS77
Ontology : AmiGOionotropic glutamate receptor complex  cell junction  alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex  dendritic spine membrane  synapse  regulation of short-term neuronal synaptic plasticity  
Ontology : EGO-EBIionotropic glutamate receptor complex  cell junction  alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex  dendritic spine membrane  synapse  regulation of short-term neuronal synaptic plasticity  
NDEx NetworkSHISA9
Atlas of Cancer Signalling NetworkSHISA9
Wikipedia pathwaysSHISA9
Orthology - Evolution
OrthoDB729993
GeneTree (enSembl)ENSG00000237515
Phylogenetic Trees/Animal Genes : TreeFamSHISA9
HOVERGENB4DS77
HOGENOMB4DS77
Homologs : HomoloGeneSHISA9
Homology/Alignments : Family Browser (UCSC)SHISA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHISA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHISA9
dbVarSHISA9
ClinVarSHISA9
1000_GenomesSHISA9 
Exome Variant ServerSHISA9
ExAC (Exome Aggregation Consortium)SHISA9 (select the gene name)
Genetic variants : HAPMAP729993
Genomic Variants (DGV)SHISA9 [DGVbeta]
DECIPHER (Syndromes)16:12995477-13334273  ENSG00000237515
CONAN: Copy Number AnalysisSHISA9 
Mutations
ICGC Data PortalSHISA9 
TCGA Data PortalSHISA9 
Broad Tumor PortalSHISA9
OASIS PortalSHISA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHISA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHISA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHISA9
DgiDB (Drug Gene Interaction Database)SHISA9
DoCM (Curated mutations)SHISA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHISA9 (select a term)
intoGenSHISA9
Cancer3DSHISA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613346   
Orphanet
MedgenSHISA9
Genetic Testing Registry SHISA9
NextProtB4DS77 [Medical]
TSGene729993
GENETestsSHISA9
Huge Navigator SHISA9 [HugePedia]
snp3D : Map Gene to Disease729993
BioCentury BCIQSHISA9
ClinGenSHISA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729993
Chemical/Pharm GKB GenePA165450677
Clinical trialSHISA9
Miscellaneous
canSAR (ICR)SHISA9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHISA9
EVEXSHISA9
GoPubMedSHISA9
iHOPSHISA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:09 CET 2017

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