Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SHLD2P3 (shieldin complex subunit 2 pseudogene 3)

Identity

Alias (NCBI)FAM35B2
FAM35DP
HGNC (Hugo) SHLD2P3
LocusID (NCBI) 439965
Atlas_Id 80302
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47706061 and ends at 47731218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)SHLD2P3   34038
Cards
Entrez_Gene (NCBI)SHLD2P3    shieldin complex subunit 2 pseudogene 3
AliasesFAM35B2; FAM35DP
GeneCards (Weizmann)SHLD2P3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:47706061-47731218 [Contig_View]  SHLD2P3 [Vega]
TCGA cBioPortalSHLD2P3
AceView (NCBI)SHLD2P3
Genatlas (Paris)SHLD2P3
SOURCE (Princeton)SHLD2P3
Genetics Home Reference (NIH)SHLD2P3
Genomic and cartography
GoldenPath hg38 (UCSC)SHLD2P3  -     chr10:47706061-47731218 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHLD2P3  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathSHLD2P3 - 10q11.22 [CytoView hg19]  SHLD2P3 - 10q11.22 [CytoView hg38]
Genome Data Viewer NCBISHLD2P3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK294120
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SHLD2P3
Gene ExpressionSHLD2P3 [ NCBI-GEO ]   SHLD2P3 [ EBI - ARRAY_EXPRESS ]   SHLD2P3 [ SEEK ]   SHLD2P3 [ MEM ]
Gene Expression Viewer (FireBrowse)SHLD2P3 [ Firebrowse - Broad ]
GenevisibleExpression of SHLD2P3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439965
GTEX Portal (Tissue expression)SHLD2P3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHLD2P3
Protein Interaction databases
BioGRIDSHLD2P3
STRING (EMBL)SHLD2P3
ZODIACSHLD2P3
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXSHLD2P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:20:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.