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SHQ1 (SHQ1, H/ACA ribonucleoprotein assembly factor)

Identity

Alias_namesSHQ1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ10539
Shq1p
Other aliasGRIM-1
HGNC (Hugo) SHQ1
LocusID (NCBI) 55164
Atlas_Id 52641
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 72749277 and ends at 72848447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHQ1   25543
Cards
Entrez_Gene (NCBI)SHQ1  55164  SHQ1, H/ACA ribonucleoprotein assembly factor
AliasesGRIM-1; Shq1p
GeneCards (Weizmann)SHQ1
Ensembl hg19 (Hinxton)ENSG00000144736 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144736 [Gene_View]  chr3:72749277-72848447 [Contig_View]  SHQ1 [Vega]
ICGC DataPortalENSG00000144736
TCGA cBioPortalSHQ1
AceView (NCBI)SHQ1
Genatlas (Paris)SHQ1
WikiGenes55164
SOURCE (Princeton)SHQ1
Genetics Home Reference (NIH)SHQ1
Genomic and cartography
GoldenPath hg38 (UCSC)SHQ1  -     chr3:72749277-72848447 -  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHQ1  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblSHQ1 - 3p13 [CytoView hg19]  SHQ1 - 3p13 [CytoView hg38]
Mapping of homologs : NCBISHQ1 [Mapview hg19]  SHQ1 [Mapview hg38]
OMIM613663   
Gene and transcription
Genbank (Entrez)AK001401 AK092962 AK296789 BC017204 BC017274
RefSeq transcript (Entrez)NM_018130
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHQ1
Cluster EST : UnigeneHs.606584 [ NCBI ]
CGAP (NCI)Hs.606584
Alternative Splicing GalleryENSG00000144736
Gene ExpressionSHQ1 [ NCBI-GEO ]   SHQ1 [ EBI - ARRAY_EXPRESS ]   SHQ1 [ SEEK ]   SHQ1 [ MEM ]
Gene Expression Viewer (FireBrowse)SHQ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55164
GTEX Portal (Tissue expression)SHQ1
Human Protein AtlasENSG00000144736-SHQ1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI26
Splice isoforms : SwissVarQ6PI26
PhosPhoSitePlusQ6PI26
Domaine pattern : Prosite (Expaxy)CS (PS51203)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone    SHQ1   
Domain families : Pfam (Sanger)SHQ1 (PF04925)   
Domain families : Pfam (NCBI)pfam04925   
Conserved Domain (NCBI)SHQ1
DMDM Disease mutations55164
Blocks (Seattle)SHQ1
PDB (SRS)2MNW    4PBD    4PCK   
PDB (PDBSum)2MNW    4PBD    4PCK   
PDB (IMB)2MNW    4PBD    4PCK   
PDB (RSDB)2MNW    4PBD    4PCK   
Structural Biology KnowledgeBase2MNW    4PBD    4PCK   
SCOP (Structural Classification of Proteins)2MNW    4PBD    4PCK   
CATH (Classification of proteins structures)2MNW    4PBD    4PCK   
SuperfamilyQ6PI26
Human Protein Atlas [tissue]ENSG00000144736-SHQ1 [tissue]
Peptide AtlasQ6PI26
HPRD07682
IPIIPI00465265   IPI00946295   IPI00784283   IPI00946718   IPI00946574   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI26
IntAct (EBI)Q6PI26
FunCoupENSG00000144736
BioGRIDSHQ1
STRING (EMBL)SHQ1
ZODIACSHQ1
Ontologies - Pathways
QuickGOQ6PI26
Ontology : AmiGObox H/ACA snoRNP assembly  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  Cajal body  ribonucleoprotein complex assembly  positive regulation of apoptotic process  unfolded protein binding  positive regulation of telomerase RNA localization to Cajal body  negative regulation of rRNA processing  
Ontology : EGO-EBIbox H/ACA snoRNP assembly  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  Cajal body  ribonucleoprotein complex assembly  positive regulation of apoptotic process  unfolded protein binding  positive regulation of telomerase RNA localization to Cajal body  negative regulation of rRNA processing  
NDEx NetworkSHQ1
Atlas of Cancer Signalling NetworkSHQ1
Wikipedia pathwaysSHQ1
Orthology - Evolution
OrthoDB55164
GeneTree (enSembl)ENSG00000144736
Phylogenetic Trees/Animal Genes : TreeFamSHQ1
HOVERGENQ6PI26
HOGENOMQ6PI26
Homologs : HomoloGeneSHQ1
Homology/Alignments : Family Browser (UCSC)SHQ1
Gene fusions - Rearrangements
Tumor Fusion PortalSHQ1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHQ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHQ1
dbVarSHQ1
ClinVarSHQ1
1000_GenomesSHQ1 
Exome Variant ServerSHQ1
ExAC (Exome Aggregation Consortium)ENSG00000144736
GNOMAD BrowserENSG00000144736
Genetic variants : HAPMAP55164
Genomic Variants (DGV)SHQ1 [DGVbeta]
DECIPHERSHQ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHQ1 
Mutations
ICGC Data PortalSHQ1 
TCGA Data PortalSHQ1 
Broad Tumor PortalSHQ1
OASIS PortalSHQ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHQ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHQ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SHQ1
DgiDB (Drug Gene Interaction Database)SHQ1
DoCM (Curated mutations)SHQ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHQ1 (select a term)
intoGenSHQ1
Cancer3DSHQ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613663   
Orphanet
DisGeNETSHQ1
MedgenSHQ1
Genetic Testing Registry SHQ1
NextProtQ6PI26 [Medical]
TSGene55164
GENETestsSHQ1
Target ValidationSHQ1
Huge Navigator SHQ1 [HugePedia]
snp3D : Map Gene to Disease55164
BioCentury BCIQSHQ1
ClinGenSHQ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55164
Chemical/Pharm GKB GenePA142670921
Clinical trialSHQ1
Miscellaneous
canSAR (ICR)SHQ1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHQ1
EVEXSHQ1
GoPubMedSHQ1
iHOPSHQ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:34:34 CET 2017

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