Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SHROOM4 (shroom family member 4)

Identity

Alias_symbol (synonym)KIAA1202
Other aliasSHAP
shrm4
HGNC (Hugo) SHROOM4
LocusID (NCBI) 57477
Atlas_Id 73237
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 50591645 and ends at 50814044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SHROOM4 (Xp11.22) / PAGE1 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SHROOM4   29215
Cards
Entrez_Gene (NCBI)SHROOM4  57477  shroom family member 4
AliasesSHAP; shrm4
GeneCards (Weizmann)SHROOM4
Ensembl hg19 (Hinxton)ENSG00000158352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158352 [Gene_View]  chrX:50591645-50814044 [Contig_View]  SHROOM4 [Vega]
ICGC DataPortalENSG00000158352
TCGA cBioPortalSHROOM4
AceView (NCBI)SHROOM4
Genatlas (Paris)SHROOM4
WikiGenes57477
SOURCE (Princeton)SHROOM4
Genetics Home Reference (NIH)SHROOM4
Genomic and cartography
GoldenPath hg38 (UCSC)SHROOM4  -     chrX:50591645-50814044 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHROOM4  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblSHROOM4 - Xp11.22 [CytoView hg19]  SHROOM4 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBISHROOM4 [Mapview hg19]  SHROOM4 [Mapview hg38]
OMIM300434   300579   
Gene and transcription
Genbank (Entrez)AB033028 AK092659 AK127486 AY044234 BC151240
RefSeq transcript (Entrez)NM_020717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SHROOM4
Cluster EST : UnigeneHs.420541 [ NCBI ]
CGAP (NCI)Hs.420541
Alternative Splicing GalleryENSG00000158352
Gene ExpressionSHROOM4 [ NCBI-GEO ]   SHROOM4 [ EBI - ARRAY_EXPRESS ]   SHROOM4 [ SEEK ]   SHROOM4 [ MEM ]
Gene Expression Viewer (FireBrowse)SHROOM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57477
GTEX Portal (Tissue expression)SHROOM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULL8
Splice isoforms : SwissVarQ9ULL8
PhosPhoSitePlusQ9ULL8
Domaine pattern : Prosite (Expaxy)ASD2 (PS51307)    PDZ (PS50106)   
Domains : Interpro (EBI)ASD2_dom    PDZ    Shroom4    Shroom_fam   
Domain families : Pfam (Sanger)ASD2 (PF08687)   
Domain families : Pfam (NCBI)pfam08687   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)SHROOM4
DMDM Disease mutations57477
Blocks (Seattle)SHROOM4
PDB (SRS)2EDP   
PDB (PDBSum)2EDP   
PDB (IMB)2EDP   
PDB (RSDB)2EDP   
Structural Biology KnowledgeBase2EDP   
SCOP (Structural Classification of Proteins)2EDP   
CATH (Classification of proteins structures)2EDP   
SuperfamilyQ9ULL8
Human Protein AtlasENSG00000158352
Peptide AtlasQ9ULL8
HPRD17209
IPIIPI00008176   IPI00845416   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULL8
IntAct (EBI)Q9ULL8
FunCoupENSG00000158352
BioGRIDSHROOM4
STRING (EMBL)SHROOM4
ZODIACSHROOM4
Ontologies - Pathways
QuickGOQ9ULL8
Ontology : AmiGOcell morphogenesis  stress fiber  cytoplasm  actin filament organization  brain development  cytoplasmic side of plasma membrane  basal plasma membrane  actin cytoskeleton  apical plasma membrane  myosin II complex  actin cytoskeleton organization  cortical actin cytoskeleton  filamentous actin  cognition  actin filament binding  
Ontology : EGO-EBIcell morphogenesis  stress fiber  cytoplasm  actin filament organization  brain development  cytoplasmic side of plasma membrane  basal plasma membrane  actin cytoskeleton  apical plasma membrane  myosin II complex  actin cytoskeleton organization  cortical actin cytoskeleton  filamentous actin  cognition  actin filament binding  
NDEx NetworkSHROOM4
Atlas of Cancer Signalling NetworkSHROOM4
Wikipedia pathwaysSHROOM4
Orthology - Evolution
OrthoDB57477
GeneTree (enSembl)ENSG00000158352
Phylogenetic Trees/Animal Genes : TreeFamSHROOM4
HOVERGENQ9ULL8
HOGENOMQ9ULL8
Homologs : HomoloGeneSHROOM4
Homology/Alignments : Family Browser (UCSC)SHROOM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHROOM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHROOM4
dbVarSHROOM4
ClinVarSHROOM4
1000_GenomesSHROOM4 
Exome Variant ServerSHROOM4
ExAC (Exome Aggregation Consortium)SHROOM4 (select the gene name)
Genetic variants : HAPMAP57477
Genomic Variants (DGV)SHROOM4 [DGVbeta]
DECIPHERSHROOM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHROOM4 
Mutations
ICGC Data PortalSHROOM4 
TCGA Data PortalSHROOM4 
Broad Tumor PortalSHROOM4
OASIS PortalSHROOM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHROOM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSHROOM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SHROOM4
DgiDB (Drug Gene Interaction Database)SHROOM4
DoCM (Curated mutations)SHROOM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SHROOM4 (select a term)
intoGenSHROOM4
Cancer3DSHROOM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300434    300579   
Orphanet11678   
MedgenSHROOM4
Genetic Testing Registry SHROOM4
NextProtQ9ULL8 [Medical]
TSGene57477
GENETestsSHROOM4
Target ValidationSHROOM4
Huge Navigator SHROOM4 [HugePedia]
snp3D : Map Gene to Disease57477
BioCentury BCIQSHROOM4
ClinGenSHROOM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57477
Chemical/Pharm GKB GenePA147357321
Clinical trialSHROOM4
Miscellaneous
canSAR (ICR)SHROOM4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSHROOM4
EVEXSHROOM4
GoPubMedSHROOM4
iHOPSHROOM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.