Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SHROOM4 (shroom family member 4)

Identity

Alias (NCBI)SHAP
shrm4
HGNC (Hugo) SHROOM4
HGNC Alias symbKIAA1202
LocusID (NCBI) 57477
Atlas_Id 73237
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 50591645 and ends at 50814044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SHROOM4 (Xp11.22) / PAGE1 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SHROOM4   29215
Cards
Entrez_Gene (NCBI)SHROOM4    shroom family member 4
AliasesSHAP; shrm4
GeneCards (Weizmann)SHROOM4
Ensembl hg19 (Hinxton)ENSG00000158352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158352 [Gene_View]  ENSG00000158352 [Sequence]  chrX:50591645-50814044 [Contig_View]  SHROOM4 [Vega]
ICGC DataPortalENSG00000158352
TCGA cBioPortalSHROOM4
AceView (NCBI)SHROOM4
Genatlas (Paris)SHROOM4
SOURCE (Princeton)SHROOM4
Genetics Home Reference (NIH)SHROOM4
Genomic and cartography
GoldenPath hg38 (UCSC)SHROOM4  -     chrX:50591645-50814044 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHROOM4  -     Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPathSHROOM4 - Xp11.22 [CytoView hg19]  SHROOM4 - Xp11.22 [CytoView hg38]
ImmunoBaseENSG00000158352
Genome Data Viewer NCBISHROOM4 [Mapview hg19]  
OMIM300434   300579   
Gene and transcription
Genbank (Entrez)AB033028 AK092659 AK127486 AY044234 BC151240
RefSeq transcript (Entrez)NM_020717
Consensus coding sequences : CCDS (NCBI)SHROOM4
Gene ExpressionSHROOM4 [ NCBI-GEO ]   SHROOM4 [ EBI - ARRAY_EXPRESS ]   SHROOM4 [ SEEK ]   SHROOM4 [ MEM ]
Gene Expression Viewer (FireBrowse)SHROOM4 [ Firebrowse - Broad ]
GenevisibleExpression of SHROOM4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57477
GTEX Portal (Tissue expression)SHROOM4
Human Protein AtlasENSG00000158352-SHROOM4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULL8
PhosPhoSitePlusQ9ULL8
Domaine pattern : Prosite (Expaxy)ASD2 (PS51307)    PDZ (PS50106)   
Domains : Interpro (EBI)ASD2_dom    PDZ    PDZ_sf    Shroom4    Shroom_fam   
Domain families : Pfam (Sanger)ASD2 (PF08687)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam08687    pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)SHROOM4
PDB (RSDB)2EDP   
PDB Europe2EDP   
PDB (PDBSum)2EDP   
PDB (IMB)2EDP   
Structural Biology KnowledgeBase2EDP   
SCOP (Structural Classification of Proteins)2EDP   
CATH (Classification of proteins structures)2EDP   
SuperfamilyQ9ULL8
AlphaFold pdb e-kbQ9ULL8   
Human Protein Atlas [tissue]ENSG00000158352-SHROOM4 [tissue]
HPRD17209
Protein Interaction databases
DIP (DOE-UCLA)Q9ULL8
IntAct (EBI)Q9ULL8
BioGRIDSHROOM4
STRING (EMBL)SHROOM4
ZODIACSHROOM4
Ontologies - Pathways
QuickGOQ9ULL8
Ontology : AmiGOcell morphogenesis  stress fiber  nucleoplasm  cytoplasm  actin filament  adherens junction  focal adhesion  actin filament organization  actin filament organization  brain development  cytoplasmic side of plasma membrane  basal plasma membrane  actin cytoskeleton  apical plasma membrane  apical plasma membrane  actin cytoskeleton organization  cortical actin cytoskeleton  cortical actin cytoskeleton  intracellular membrane-bounded organelle  apical junction complex  myosin II binding  cognition  actin filament binding  actin filament binding  
Ontology : EGO-EBIcell morphogenesis  stress fiber  nucleoplasm  cytoplasm  actin filament  adherens junction  focal adhesion  actin filament organization  actin filament organization  brain development  cytoplasmic side of plasma membrane  basal plasma membrane  actin cytoskeleton  apical plasma membrane  apical plasma membrane  actin cytoskeleton organization  cortical actin cytoskeleton  cortical actin cytoskeleton  intracellular membrane-bounded organelle  apical junction complex  myosin II binding  cognition  actin filament binding  actin filament binding  
NDEx NetworkSHROOM4
Atlas of Cancer Signalling NetworkSHROOM4
Wikipedia pathwaysSHROOM4
Orthology - Evolution
OrthoDB57477
GeneTree (enSembl)ENSG00000158352
Phylogenetic Trees/Animal Genes : TreeFamSHROOM4
Homologs : HomoloGeneSHROOM4
Homology/Alignments : Family Browser (UCSC)SHROOM4
Gene fusions - Rearrangements
Fusion : QuiverSHROOM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSHROOM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SHROOM4
dbVarSHROOM4
ClinVarSHROOM4
MonarchSHROOM4
1000_GenomesSHROOM4 
Exome Variant ServerSHROOM4
GNOMAD BrowserENSG00000158352
Varsome BrowserSHROOM4
ACMGSHROOM4 variants
VarityQ9ULL8
Genomic Variants (DGV)SHROOM4 [DGVbeta]
DECIPHERSHROOM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSHROOM4 
Mutations
ICGC Data PortalSHROOM4 
TCGA Data PortalSHROOM4 
Broad Tumor PortalSHROOM4
OASIS PortalSHROOM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSHROOM4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSHROOM4
Mutations and Diseases : HGMDSHROOM4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSHROOM4
DgiDB (Drug Gene Interaction Database)SHROOM4
DoCM (Curated mutations)SHROOM4
CIViC (Clinical Interpretations of Variants in Cancer)SHROOM4
Cancer3DSHROOM4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300434    300579   
Orphanet11678   
DisGeNETSHROOM4
MedgenSHROOM4
Genetic Testing Registry SHROOM4
NextProtQ9ULL8 [Medical]
GENETestsSHROOM4
Target ValidationSHROOM4
Huge Navigator SHROOM4 [HugePedia]
ClinGenSHROOM4
Clinical trials, drugs, therapy
MyCancerGenomeSHROOM4
Protein Interactions : CTDSHROOM4
Pharm GKB GenePA147357321
PharosQ9ULL8
Clinical trialSHROOM4
Miscellaneous
canSAR (ICR)SHROOM4
HarmonizomeSHROOM4
DataMed IndexSHROOM4
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSHROOM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:34 CEST 2021

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