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SHTN1 (shootin 1)

Identity

Alias (NCBI)KIAA1598
shootin-1
HGNC (Hugo) SHTN1
HGNC Alias symbshootin1
shootin-1
HGNC Previous nameKIAA1598
HGNC Previous nameKIAA1598
LocusID (NCBI) 57698
Atlas_Id 55059
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116881477 and ends at 117005187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPA12A (10q25.3) / SHTN1 (10q25.3)SHTN1 (10q25.3) / EMX2OS (10q26.11)SHTN1 (10q25.3) / FAM24B (10q26.13)
SHTN1 (10q25.3) / OAT (10q26.13)SHTN1 (10q25.3) / PRDX3 (10q26.11)SHTN1 (10q25.3) / ROS1 (6q22.1)
UBE2D3 (4q24) / SHTN1 (10q25.3)SHTN1 10q25.3 / ROS1 6q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SHTN1   29319
Cards
Entrez_Gene (NCBI)SHTN1    shootin 1
AliasesKIAA1598; shootin-1
GeneCards (Weizmann)SHTN1
Ensembl hg19 (Hinxton)ENSG00000187164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187164 [Gene_View]  ENSG00000187164 [Sequence]  chr10:116881477-117005187 [Contig_View]  SHTN1 [Vega]
ICGC DataPortalENSG00000187164
TCGA cBioPortalSHTN1
AceView (NCBI)SHTN1
Genatlas (Paris)SHTN1
SOURCE (Princeton)SHTN1
Genetics Home Reference (NIH)SHTN1
Genomic and cartography
GoldenPath hg38 (UCSC)SHTN1  -     chr10:116881477-117005187 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SHTN1  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathSHTN1 - 10q25.3 [CytoView hg19]  SHTN1 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000187164
Genome Data Viewer NCBISHTN1 [Mapview hg19]  
OMIM611171   
Gene and transcription
Genbank (Entrez)AB046818 AK001984 AK091381 AK091410 AK091578
RefSeq transcript (Entrez)NM_001127211 NM_001258298 NM_001258299 NM_001258300 NM_018330
Consensus coding sequences : CCDS (NCBI)SHTN1
Gene ExpressionSHTN1 [ NCBI-GEO ]   SHTN1 [ EBI - ARRAY_EXPRESS ]   SHTN1 [ SEEK ]   SHTN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SHTN1 [ Firebrowse - Broad ]
GenevisibleExpression of SHTN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57698
GTEX Portal (Tissue expression)SHTN1
Human Protein AtlasENSG00000187164-SHTN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SHTN1
Human Protein Atlas [tissue]ENSG00000187164-SHTN1 [tissue]
HPRD11155
Protein Interaction databases
BioGRIDSHTN1
STRING (EMBL)SHTN1
ZODIACSHTN1
Ontologies - Pathways
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSHTN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:31:07 CEST 2021

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