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SIAH3 (siah E3 ubiquitin protein ligase family member 3)

Identity

Alias_namesseven in absentia homolog 3 (Drosophila)
Alias_symbol (synonym)FLJ39203
Other alias-
HGNC (Hugo) SIAH3
LocusID (NCBI) 283514
Atlas_Id 73238
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 45780281 and ends at 45851711 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIAH3   30553
Cards
Entrez_Gene (NCBI)SIAH3  283514  siah E3 ubiquitin protein ligase family member 3
Aliases
GeneCards (Weizmann)SIAH3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:45780281-45851711 [Contig_View]  SIAH3 [Vega]
TCGA cBioPortalSIAH3
AceView (NCBI)SIAH3
Genatlas (Paris)SIAH3
WikiGenes283514
SOURCE (Princeton)SIAH3
Genetics Home Reference (NIH)SIAH3
Genomic and cartography
GoldenPath hg38 (UCSC)SIAH3  -     chr13:45780281-45851711 -  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIAH3  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblSIAH3 - 13q14.13 [CytoView hg19]  SIAH3 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBISIAH3 [Mapview hg19]  SIAH3 [Mapview hg38]
OMIM615609   
Gene and transcription
Genbank (Entrez)AK125411 BC041372 BC148396 DA804734
RefSeq transcript (Entrez)NM_198849
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIAH3
Cluster EST : UnigeneHs.368483 [ NCBI ]
CGAP (NCI)Hs.368483
Gene ExpressionSIAH3 [ NCBI-GEO ]   SIAH3 [ EBI - ARRAY_EXPRESS ]   SIAH3 [ SEEK ]   SIAH3 [ MEM ]
Gene Expression Viewer (FireBrowse)SIAH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283514
GTEX Portal (Tissue expression)SIAH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW03
Splice isoforms : SwissVarQ8IW03
PhosPhoSitePlusQ8IW03
Domains : Interpro (EBI)7-in-absentia-prot_TRAF-dom    SINA-like    TRAF-like   
Domain families : Pfam (Sanger)Sina (PF03145)   
Domain families : Pfam (NCBI)pfam03145   
Conserved Domain (NCBI)SIAH3
DMDM Disease mutations283514
Blocks (Seattle)SIAH3
SuperfamilyQ8IW03
Peptide AtlasQ8IW03
HPRD14145
IPIIPI00217090   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW03
IntAct (EBI)Q8IW03
BioGRIDSIAH3
STRING (EMBL)SIAH3
ZODIACSIAH3
Ontologies - Pathways
QuickGOQ8IW03
Ontology : AmiGOnucleus  mitochondrion  ubiquitin-dependent protein catabolic process  multicellular organism development  regulation of protein stability  metal ion binding  negative regulation of protein targeting to mitochondrion  
Ontology : EGO-EBInucleus  mitochondrion  ubiquitin-dependent protein catabolic process  multicellular organism development  regulation of protein stability  metal ion binding  negative regulation of protein targeting to mitochondrion  
NDEx NetworkSIAH3
Atlas of Cancer Signalling NetworkSIAH3
Wikipedia pathwaysSIAH3
Orthology - Evolution
OrthoDB283514
Phylogenetic Trees/Animal Genes : TreeFamSIAH3
HOVERGENQ8IW03
HOGENOMQ8IW03
Homologs : HomoloGeneSIAH3
Homology/Alignments : Family Browser (UCSC)SIAH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIAH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIAH3
dbVarSIAH3
ClinVarSIAH3
1000_GenomesSIAH3 
Exome Variant ServerSIAH3
ExAC (Exome Aggregation Consortium)SIAH3 (select the gene name)
Genetic variants : HAPMAP283514
Genomic Variants (DGV)SIAH3 [DGVbeta]
DECIPHERSIAH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIAH3 
Mutations
ICGC Data PortalSIAH3 
TCGA Data PortalSIAH3 
Broad Tumor PortalSIAH3
OASIS PortalSIAH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIAH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIAH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIAH3
DgiDB (Drug Gene Interaction Database)SIAH3
DoCM (Curated mutations)SIAH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIAH3 (select a term)
intoGenSIAH3
Cancer3DSIAH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615609   
Orphanet
MedgenSIAH3
Genetic Testing Registry SIAH3
NextProtQ8IW03 [Medical]
TSGene283514
GENETestsSIAH3
Target ValidationSIAH3
Huge Navigator SIAH3 [HugePedia]
snp3D : Map Gene to Disease283514
BioCentury BCIQSIAH3
ClinGenSIAH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283514
Chemical/Pharm GKB GenePA164725697
Clinical trialSIAH3
Miscellaneous
canSAR (ICR)SIAH3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIAH3
EVEXSIAH3
GoPubMedSIAH3
iHOPSIAH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:44 CEST 2017

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