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SIDT1 (SID1 transmembrane family member 1)

Identity

Alias_namesSID1 transmembrane family, member 1
Alias_symbol (synonym)FLJ20174
SID-1
Other aliasSID1
HGNC (Hugo) SIDT1
LocusID (NCBI) 54847
Atlas_Id 73239
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 113532371 and ends at 113629575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SIDT1 (3q13.2) / HBS1L (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIDT1   25967
Cards
Entrez_Gene (NCBI)SIDT1  54847  SID1 transmembrane family member 1
AliasesSID-1; SID1
GeneCards (Weizmann)SIDT1
Ensembl hg19 (Hinxton)ENSG00000072858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072858 [Gene_View]  chr3:113532371-113629575 [Contig_View]  SIDT1 [Vega]
ICGC DataPortalENSG00000072858
TCGA cBioPortalSIDT1
AceView (NCBI)SIDT1
Genatlas (Paris)SIDT1
WikiGenes54847
SOURCE (Princeton)SIDT1
Genetics Home Reference (NIH)SIDT1
Genomic and cartography
GoldenPath hg38 (UCSC)SIDT1  -     chr3:113532371-113629575 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIDT1  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblSIDT1 - 3q13.2 [CytoView hg19]  SIDT1 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBISIDT1 [Mapview hg19]  SIDT1 [Mapview hg38]
OMIM606816   
Gene and transcription
Genbank (Entrez)AI004220 AK295938 AK303385 BC117222 BC143776
RefSeq transcript (Entrez)NM_001308350 NM_001322294 NM_001322295 NM_001322296 NM_001322297 NM_001322298 NM_001322299 NM_001322300 NM_017699
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIDT1
Cluster EST : UnigeneHs.591291 [ NCBI ]
CGAP (NCI)Hs.591291
Alternative Splicing GalleryENSG00000072858
Gene ExpressionSIDT1 [ NCBI-GEO ]   SIDT1 [ EBI - ARRAY_EXPRESS ]   SIDT1 [ SEEK ]   SIDT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SIDT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54847
GTEX Portal (Tissue expression)SIDT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]    [expression]  [interaction]
NextProtQ9NXL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXL6
Splice isoforms : SwissVarQ9NXL6
PhosPhoSitePlusQ9NXL6
Domains : Interpro (EBI)SID1_TM_fam   
Domain families : Pfam (Sanger)SID-1_RNA_chan (PF13965)   
Domain families : Pfam (NCBI)pfam13965   
Conserved Domain (NCBI)SIDT1
DMDM Disease mutations54847
Blocks (Seattle)SIDT1
SuperfamilyQ9NXL6
Human Protein AtlasENSG00000072858
Peptide AtlasQ9NXL6
HPRD12111
IPIIPI00871570   IPI00160775   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXL6
IntAct (EBI)Q9NXL6
FunCoupENSG00000072858
BioGRIDSIDT1
STRING (EMBL)SIDT1
ZODIACSIDT1
Ontologies - Pathways
QuickGOQ9NXL6
Ontology : AmiGOintegral component of membrane  dsRNA transport  RNA transmembrane transporter activity  
Ontology : EGO-EBIintegral component of membrane  dsRNA transport  RNA transmembrane transporter activity  
NDEx NetworkSIDT1
Atlas of Cancer Signalling NetworkSIDT1
Wikipedia pathwaysSIDT1
Orthology - Evolution
OrthoDB54847
GeneTree (enSembl)ENSG00000072858
Phylogenetic Trees/Animal Genes : TreeFamSIDT1
HOVERGENQ9NXL6
HOGENOMQ9NXL6
Homologs : HomoloGeneSIDT1
Homology/Alignments : Family Browser (UCSC)SIDT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIDT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIDT1
dbVarSIDT1
ClinVarSIDT1
1000_GenomesSIDT1 
Exome Variant ServerSIDT1
ExAC (Exome Aggregation Consortium)SIDT1 (select the gene name)
Genetic variants : HAPMAP54847
Genomic Variants (DGV)SIDT1 [DGVbeta]
DECIPHERSIDT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIDT1 
Mutations
ICGC Data PortalSIDT1 
TCGA Data PortalSIDT1 
Broad Tumor PortalSIDT1
OASIS PortalSIDT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIDT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIDT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIDT1
DgiDB (Drug Gene Interaction Database)SIDT1
DoCM (Curated mutations)SIDT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIDT1 (select a term)
intoGenSIDT1
Cancer3DSIDT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606816   
Orphanet
MedgenSIDT1
Genetic Testing Registry SIDT1
NextProtQ9NXL6 [Medical]
TSGene54847
GENETestsSIDT1
Target ValidationSIDT1
Huge Navigator SIDT1 [HugePedia]
snp3D : Map Gene to Disease54847
BioCentury BCIQSIDT1
ClinGenSIDT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54847
Chemical/Pharm GKB GenePA134923837
Clinical trialSIDT1
Miscellaneous
canSAR (ICR)SIDT1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIDT1
EVEXSIDT1
GoPubMedSIDT1
iHOPSIDT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:49 CEST 2017

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