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SIDT2 (SID1 transmembrane family member 2)

Identity

Alias (NCBI)CGI-40
HGNC (Hugo) SIDT2
HGNC Alias symbCGI-40
HGNC Previous nameSID1 transmembrane family, member 2
LocusID (NCBI) 51092
Atlas_Id 56230
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117178743 and ends at 117197442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTGDS (9q34.3) / SIDT2 (11q23.3)SIDT2 (11q23.3) / SIDT2 (11q23.3)SIDT2 (11q23.3) / STKLD1 (9q34.2)
SIDT2 (11q23.3) / TAGLN (11q23.3)STKLD1 (9q34.2) / SIDT2 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q23;q23) SIDT2/TAGLN


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 11 ]
  SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)
SIDT2/TAGLN (11q23)


External links

Nomenclature
HGNC (Hugo)SIDT2   24272
Cards
Entrez_Gene (NCBI)SIDT2    SID1 transmembrane family member 2
AliasesCGI-40
GeneCards (Weizmann)SIDT2
Ensembl hg19 (Hinxton)ENSG00000149577 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149577 [Gene_View]  ENSG00000149577 [Sequence]  chr11:117178743-117197442 [Contig_View]  SIDT2 [Vega]
ICGC DataPortalENSG00000149577
TCGA cBioPortalSIDT2
AceView (NCBI)SIDT2
Genatlas (Paris)SIDT2
SOURCE (Princeton)SIDT2
Genetics Home Reference (NIH)SIDT2
Genomic and cartography
GoldenPath hg38 (UCSC)SIDT2  -     chr11:117178743-117197442 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIDT2  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathSIDT2 - 11q23.3 [CytoView hg19]  SIDT2 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000149577
genome Data Viewer NCBISIDT2 [Mapview hg19]  
OMIM617551   
Gene and transcription
Genbank (Entrez)AF151799 AK075137 AK075471 AK292501 AK292974
RefSeq transcript (Entrez)NM_001040455 NM_015996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIDT2
Alternative Splicing GalleryENSG00000149577
Gene ExpressionSIDT2 [ NCBI-GEO ]   SIDT2 [ EBI - ARRAY_EXPRESS ]   SIDT2 [ SEEK ]   SIDT2 [ MEM ]
Gene Expression Viewer (FireBrowse)SIDT2 [ Firebrowse - Broad ]
GenevisibleExpression of SIDT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51092
GTEX Portal (Tissue expression)SIDT2
Human Protein AtlasENSG00000149577-SIDT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBJ9
Splice isoforms : SwissVarQ8NBJ9
PhosPhoSitePlusQ8NBJ9
Domains : Interpro (EBI)SID1_TM_fam   
Domain families : Pfam (Sanger)SID-1_RNA_chan (PF13965)   
Domain families : Pfam (NCBI)pfam13965   
Conserved Domain (NCBI)SIDT2
Blocks (Seattle)SIDT2
SuperfamilyQ8NBJ9
Human Protein Atlas [tissue]ENSG00000149577-SIDT2 [tissue]
Peptide AtlasQ8NBJ9
HPRD15345
IPIIPI00473077   IPI00908306   IPI00983846   IPI00744409   IPI00984377   IPI00981200   IPI00953391   IPI00985165   IPI00976920   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBJ9
IntAct (EBI)Q8NBJ9
BioGRIDSIDT2
STRING (EMBL)SIDT2
ZODIACSIDT2
Ontologies - Pathways
QuickGOQ8NBJ9
Ontology : AmiGOcell morphogenesis  type B pancreatic cell development  DNA binding  double-stranded RNA binding  lysosome  lysosome  lysosomal membrane  plasma membrane  plasma membrane  RNA catabolic process  response to glucose  integral component of membrane  dsRNA transport  AP-2 adaptor complex binding  AP-1 adaptor complex binding  glucose homeostasis  type B pancreatic cell proliferation  RNA transport  RNA transport  nucleic acid transmembrane transporter activity  RNA transmembrane transporter activity  regulation of insulin secretion involved in cellular response to glucose stimulus  
Ontology : EGO-EBIcell morphogenesis  type B pancreatic cell development  DNA binding  double-stranded RNA binding  lysosome  lysosome  lysosomal membrane  plasma membrane  plasma membrane  RNA catabolic process  response to glucose  integral component of membrane  dsRNA transport  AP-2 adaptor complex binding  AP-1 adaptor complex binding  glucose homeostasis  type B pancreatic cell proliferation  RNA transport  RNA transport  nucleic acid transmembrane transporter activity  RNA transmembrane transporter activity  regulation of insulin secretion involved in cellular response to glucose stimulus  
NDEx NetworkSIDT2
Atlas of Cancer Signalling NetworkSIDT2
Wikipedia pathwaysSIDT2
Orthology - Evolution
OrthoDB51092
GeneTree (enSembl)ENSG00000149577
Phylogenetic Trees/Animal Genes : TreeFamSIDT2
HOGENOMQ8NBJ9
Homologs : HomoloGeneSIDT2
Homology/Alignments : Family Browser (UCSC)SIDT2
Gene fusions - Rearrangements
Fusion : QuiverSIDT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIDT2 [hg38]
dbVarSIDT2
ClinVarSIDT2
MonarchSIDT2
1000_GenomesSIDT2 
Exome Variant ServerSIDT2
GNOMAD BrowserENSG00000149577
Varsome BrowserSIDT2
Genomic Variants (DGV)SIDT2 [DGVbeta]
DECIPHERSIDT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIDT2 
Mutations
ICGC Data PortalSIDT2 
TCGA Data PortalSIDT2 
Broad Tumor PortalSIDT2
OASIS PortalSIDT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIDT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSIDT2
Mutations and Diseases : HGMDSIDT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIDT2
DgiDB (Drug Gene Interaction Database)SIDT2
DoCM (Curated mutations)SIDT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIDT2 (select a term)
intoGenSIDT2
Cancer3DSIDT2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617551   
Orphanet
DisGeNETSIDT2
MedgenSIDT2
Genetic Testing Registry SIDT2
NextProtQ8NBJ9 [Medical]
GENETestsSIDT2
Target ValidationSIDT2
Huge Navigator SIDT2 [HugePedia]
ClinGenSIDT2
Clinical trials, drugs, therapy
MyCancerGenomeSIDT2
Protein Interactions : CTD
Pharm GKB GenePA134910333
PharosQ8NBJ9
Clinical trialSIDT2
Miscellaneous
canSAR (ICR)SIDT2 (select the gene name)
HarmonizomeSIDT2
DataMed IndexSIDT2
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSIDT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:37:16 CET 2021

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