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SIDT2 (SID1 transmembrane family member 2)

Identity

Alias_namesSID1 transmembrane family
Alias_symbol (synonym)CGI-40
Other alias
HGNC (Hugo) SIDT2
LocusID (NCBI) 51092
Atlas_Id 56230
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117049939 and ends at 117068161 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PTGDS (9q34.3) / SIDT2 (11q23.3)SIDT2 (11q23.3) / SIDT2 (11q23.3)SIDT2 (11q23.3) / STKLD1 (9q34.2)
SIDT2 (11q23.3) / TAGLN (11q23.3)STKLD1 (9q34.2) / SIDT2 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIDT2   24272
Cards
Entrez_Gene (NCBI)SIDT2  51092  SID1 transmembrane family member 2
AliasesCGI-40
GeneCards (Weizmann)SIDT2
Ensembl hg19 (Hinxton)ENSG00000149577 [Gene_View]  chr11:117049939-117068161 [Contig_View]  SIDT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149577 [Gene_View]  chr11:117049939-117068161 [Contig_View]  SIDT2 [Vega]
ICGC DataPortalENSG00000149577
TCGA cBioPortalSIDT2
AceView (NCBI)SIDT2
Genatlas (Paris)SIDT2
WikiGenes51092
SOURCE (Princeton)SIDT2
Genetics Home Reference (NIH)SIDT2
Genomic and cartography
GoldenPath hg19 (UCSC)SIDT2  -     chr11:117049939-117068161 +  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIDT2  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblSIDT2 - 11q23.3 [CytoView hg19]  SIDT2 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBISIDT2 [Mapview hg19]  SIDT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001040455 NM_015996
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIDT2
Cluster EST : UnigeneHs.712144 [ NCBI ]
CGAP (NCI)Hs.712144
Alternative Splicing GalleryENSG00000149577
Gene ExpressionSIDT2 [ NCBI-GEO ]   SIDT2 [ EBI - ARRAY_EXPRESS ]   SIDT2 [ SEEK ]   SIDT2 [ MEM ]
Gene Expression Viewer (FireBrowse)SIDT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51092
GTEX Portal (Tissue expression)SIDT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBJ9
Splice isoforms : SwissVarQ8NBJ9
PhosPhoSitePlusQ8NBJ9
Domains : Interpro (EBI)SID1_TM_fam   
Domain families : Pfam (Sanger)SID-1_RNA_chan (PF13965)   
Domain families : Pfam (NCBI)pfam13965   
Conserved Domain (NCBI)SIDT2
DMDM Disease mutations51092
Blocks (Seattle)SIDT2
SuperfamilyQ8NBJ9
Human Protein AtlasENSG00000149577
Peptide AtlasQ8NBJ9
HPRD15345
IPIIPI00473077   IPI00908306   IPI00983846   IPI00744409   IPI00984377   IPI00981200   IPI00953391   IPI00985165   IPI00976920   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBJ9
IntAct (EBI)Q8NBJ9
FunCoupENSG00000149577
BioGRIDSIDT2
STRING (EMBL)SIDT2
ZODIACSIDT2
Ontologies - Pathways
QuickGOQ8NBJ9
Ontology : AmiGOcell morphogenesis  type B pancreatic cell development  double-stranded RNA binding  lysosomal membrane  response to glucose  integral component of membrane  dsRNA transport  glucose homeostasis  type B pancreatic cell proliferation  RNA transmembrane transporter activity  regulation of insulin secretion involved in cellular response to glucose stimulus  
Ontology : EGO-EBIcell morphogenesis  type B pancreatic cell development  double-stranded RNA binding  lysosomal membrane  response to glucose  integral component of membrane  dsRNA transport  glucose homeostasis  type B pancreatic cell proliferation  RNA transmembrane transporter activity  regulation of insulin secretion involved in cellular response to glucose stimulus  
NDEx NetworkSIDT2
Atlas of Cancer Signalling NetworkSIDT2
Wikipedia pathwaysSIDT2
Orthology - Evolution
OrthoDB51092
GeneTree (enSembl)ENSG00000149577
Phylogenetic Trees/Animal Genes : TreeFamSIDT2
HOVERGENQ8NBJ9
HOGENOMQ8NBJ9
Homologs : HomoloGeneSIDT2
Homology/Alignments : Family Browser (UCSC)SIDT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIDT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIDT2
dbVarSIDT2
ClinVarSIDT2
1000_GenomesSIDT2 
Exome Variant ServerSIDT2
ExAC (Exome Aggregation Consortium)SIDT2 (select the gene name)
Genetic variants : HAPMAP51092
Genomic Variants (DGV)SIDT2 [DGVbeta]
DECIPHER (Syndromes)11:117049939-117068161  ENSG00000149577
CONAN: Copy Number AnalysisSIDT2 
Mutations
ICGC Data PortalSIDT2 
TCGA Data PortalSIDT2 
Broad Tumor PortalSIDT2
OASIS PortalSIDT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIDT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIDT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIDT2
DgiDB (Drug Gene Interaction Database)SIDT2
DoCM (Curated mutations)SIDT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIDT2 (select a term)
intoGenSIDT2
Cancer3DSIDT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSIDT2
Genetic Testing Registry SIDT2
NextProtQ8NBJ9 [Medical]
TSGene51092
GENETestsSIDT2
Huge Navigator SIDT2 [HugePedia]
snp3D : Map Gene to Disease51092
BioCentury BCIQSIDT2
ClinGenSIDT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51092
Chemical/Pharm GKB GenePA134910333
Clinical trialSIDT2
Miscellaneous
canSAR (ICR)SIDT2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIDT2
EVEXSIDT2
GoPubMedSIDT2
iHOPSIDT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:16 CEST 2017

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