Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SIGLEC11 (sialic acid binding Ig-like lectin 11)

Identity

Alias_namessialic acid binding Ig-like lectin 11
Other alias-
HGNC (Hugo) SIGLEC11
LocusID (NCBI) 114132
Atlas_Id 73243
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50452250 and ends at 50464429 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIGLEC11   15622
Cards
Entrez_Gene (NCBI)SIGLEC11  114132  sialic acid binding Ig-like lectin 11
Aliases
GeneCards (Weizmann)SIGLEC11
Ensembl hg19 (Hinxton)ENSG00000161640 [Gene_View]  chr19:50452250-50464429 [Contig_View]  SIGLEC11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161640 [Gene_View]  chr19:50452250-50464429 [Contig_View]  SIGLEC11 [Vega]
ICGC DataPortalENSG00000161640
TCGA cBioPortalSIGLEC11
AceView (NCBI)SIGLEC11
Genatlas (Paris)SIGLEC11
WikiGenes114132
SOURCE (Princeton)SIGLEC11
Genetics Home Reference (NIH)SIGLEC11
Genomic and cartography
GoldenPath hg19 (UCSC)SIGLEC11  -     chr19:50452250-50464429 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIGLEC11  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblSIGLEC11 - 19q13.33 [CytoView hg19]  SIGLEC11 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISIGLEC11 [Mapview hg19]  SIGLEC11 [Mapview hg38]
OMIM607157   
Gene and transcription
Genbank (Entrez)AB072038 AF337818 AY358135 BC156822
RefSeq transcript (Entrez)NM_001135163 NM_052884
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_030323 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SIGLEC11
Cluster EST : UnigeneHs.661852 [ NCBI ]
CGAP (NCI)Hs.661852
Alternative Splicing GalleryENSG00000161640
Gene ExpressionSIGLEC11 [ NCBI-GEO ]   SIGLEC11 [ EBI - ARRAY_EXPRESS ]   SIGLEC11 [ SEEK ]   SIGLEC11 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLEC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114132
GTEX Portal (Tissue expression)SIGLEC11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RL6
Splice isoforms : SwissVarQ96RL6
PhosPhoSitePlusQ96RL6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)CD80_C2-set    Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set    Immunoglobulin   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)    I-set (PF07679)    ig (PF00047)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam08205    pfam07679    pfam00047    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)SIGLEC11
DMDM Disease mutations114132
Blocks (Seattle)SIGLEC11
SuperfamilyQ96RL6
Human Protein AtlasENSG00000161640
Peptide AtlasQ96RL6
HPRD06196
IPIIPI00744876   IPI00385641   IPI00926555   IPI00925792   
Protein Interaction databases
DIP (DOE-UCLA)Q96RL6
IntAct (EBI)Q96RL6
FunCoupENSG00000161640
BioGRIDSIGLEC11
STRING (EMBL)SIGLEC11
ZODIACSIGLEC11
Ontologies - Pathways
QuickGOQ96RL6
Ontology : AmiGOcell adhesion  integral component of membrane  carbohydrate binding  
Ontology : EGO-EBIcell adhesion  integral component of membrane  carbohydrate binding  
NDEx NetworkSIGLEC11
Atlas of Cancer Signalling NetworkSIGLEC11
Wikipedia pathwaysSIGLEC11
Orthology - Evolution
OrthoDB114132
GeneTree (enSembl)ENSG00000161640
Phylogenetic Trees/Animal Genes : TreeFamSIGLEC11
HOVERGENQ96RL6
HOGENOMQ96RL6
Homologs : HomoloGeneSIGLEC11
Homology/Alignments : Family Browser (UCSC)SIGLEC11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLEC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLEC11
dbVarSIGLEC11
ClinVarSIGLEC11
1000_GenomesSIGLEC11 
Exome Variant ServerSIGLEC11
ExAC (Exome Aggregation Consortium)SIGLEC11 (select the gene name)
Genetic variants : HAPMAP114132
Genomic Variants (DGV)SIGLEC11 [DGVbeta]
DECIPHER (Syndromes)19:50452250-50464429  ENSG00000161640
CONAN: Copy Number AnalysisSIGLEC11 
Mutations
ICGC Data PortalSIGLEC11 
TCGA Data PortalSIGLEC11 
Broad Tumor PortalSIGLEC11
OASIS PortalSIGLEC11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIGLEC11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIGLEC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIGLEC11
DgiDB (Drug Gene Interaction Database)SIGLEC11
DoCM (Curated mutations)SIGLEC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIGLEC11 (select a term)
intoGenSIGLEC11
Cancer3DSIGLEC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607157   
Orphanet
MedgenSIGLEC11
Genetic Testing Registry SIGLEC11
NextProtQ96RL6 [Medical]
TSGene114132
GENETestsSIGLEC11
Huge Navigator SIGLEC11 [HugePedia]
snp3D : Map Gene to Disease114132
BioCentury BCIQSIGLEC11
ClinGenSIGLEC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114132
Chemical/Pharm GKB GenePA38005
Clinical trialSIGLEC11
Miscellaneous
canSAR (ICR)SIGLEC11 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIGLEC11
EVEXSIGLEC11
GoPubMedSIGLEC11
iHOPSIGLEC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:11 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.