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SIGLEC14 (sialic acid binding Ig like lectin 14)

Identity

Alias_namessialic acid binding Ig-like lectin 14
Other alias-
HGNC (Hugo) SIGLEC14
LocusID (NCBI) 100049587
Atlas_Id 73244
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51642553 and ends at 51646879 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIGLEC14   32926
Cards
Entrez_Gene (NCBI)SIGLEC14  100049587  sialic acid binding Ig like lectin 14
Aliases
GeneCards (Weizmann)SIGLEC14
Ensembl hg19 (Hinxton)ENSG00000254415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254415 [Gene_View]  chr19:51642553-51646879 [Contig_View]  SIGLEC14 [Vega]
ICGC DataPortalENSG00000254415
TCGA cBioPortalSIGLEC14
AceView (NCBI)SIGLEC14
Genatlas (Paris)SIGLEC14
WikiGenes100049587
SOURCE (Princeton)SIGLEC14
Genetics Home Reference (NIH)SIGLEC14
Genomic and cartography
GoldenPath hg38 (UCSC)SIGLEC14  -     chr19:51642553-51646879 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIGLEC14  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblSIGLEC14 - 19q13.41 [CytoView hg19]  SIGLEC14 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBISIGLEC14 [Mapview hg19]  SIGLEC14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK298284 AY854038 CA439587 DC428881
RefSeq transcript (Entrez)NM_001098612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIGLEC14
Cluster EST : UnigeneHs.741865 [ NCBI ]
CGAP (NCI)Hs.741865
Alternative Splicing GalleryENSG00000254415
Gene ExpressionSIGLEC14 [ NCBI-GEO ]   SIGLEC14 [ EBI - ARRAY_EXPRESS ]   SIGLEC14 [ SEEK ]   SIGLEC14 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLEC14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100049587
GTEX Portal (Tissue expression)SIGLEC14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08ET2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08ET2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08ET2
Splice isoforms : SwissVarQ08ET2
PhosPhoSitePlusQ08ET2
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)SIGLEC14
DMDM Disease mutations100049587
Blocks (Seattle)SIGLEC14
SuperfamilyQ08ET2
Human Protein AtlasENSG00000254415
Peptide AtlasQ08ET2
IPIIPI00432525   
Protein Interaction databases
DIP (DOE-UCLA)Q08ET2
IntAct (EBI)Q08ET2
FunCoupENSG00000254415
BioGRIDSIGLEC14
STRING (EMBL)SIGLEC14
ZODIACSIGLEC14
Ontologies - Pathways
QuickGOQ08ET2
Ontology : AmiGOplasma membrane  cell adhesion  integral component of membrane  carbohydrate binding  neutrophil degranulation  innate immune response  tertiary granule membrane  ficolin-1-rich granule membrane  
Ontology : EGO-EBIplasma membrane  cell adhesion  integral component of membrane  carbohydrate binding  neutrophil degranulation  innate immune response  tertiary granule membrane  ficolin-1-rich granule membrane  
NDEx NetworkSIGLEC14
Atlas of Cancer Signalling NetworkSIGLEC14
Wikipedia pathwaysSIGLEC14
Orthology - Evolution
OrthoDB100049587
GeneTree (enSembl)ENSG00000254415
Phylogenetic Trees/Animal Genes : TreeFamSIGLEC14
HOVERGENQ08ET2
HOGENOMQ08ET2
Homologs : HomoloGeneSIGLEC14
Homology/Alignments : Family Browser (UCSC)SIGLEC14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLEC14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLEC14
dbVarSIGLEC14
ClinVarSIGLEC14
1000_GenomesSIGLEC14 
Exome Variant ServerSIGLEC14
ExAC (Exome Aggregation Consortium)SIGLEC14 (select the gene name)
Genetic variants : HAPMAP100049587
Genomic Variants (DGV)SIGLEC14 [DGVbeta]
DECIPHERSIGLEC14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIGLEC14 
Mutations
ICGC Data PortalSIGLEC14 
TCGA Data PortalSIGLEC14 
Broad Tumor PortalSIGLEC14
OASIS PortalSIGLEC14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIGLEC14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIGLEC14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIGLEC14
DgiDB (Drug Gene Interaction Database)SIGLEC14
DoCM (Curated mutations)SIGLEC14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIGLEC14 (select a term)
intoGenSIGLEC14
Cancer3DSIGLEC14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSIGLEC14
Genetic Testing Registry SIGLEC14
NextProtQ08ET2 [Medical]
TSGene100049587
GENETestsSIGLEC14
Huge Navigator SIGLEC14 [HugePedia]
snp3D : Map Gene to Disease100049587
BioCentury BCIQSIGLEC14
ClinGenSIGLEC14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100049587
Chemical/Pharm GKB GenePA162403331
Clinical trialSIGLEC14
Miscellaneous
canSAR (ICR)SIGLEC14 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIGLEC14
EVEXSIGLEC14
GoPubMedSIGLEC14
iHOPSIGLEC14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:53:04 CEST 2017

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