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SIGLEC16 (sialic acid binding Ig like lectin 16 (gene/pseudogene))

Identity

Alias_namesSIGLECP16
sialic acid binding Ig-like lectin, pseudogene 16
sialic acid binding Ig-like lectin 16 (gene/pseudogene)
Alias_symbol (synonym)Siglec-P16
Other alias
HGNC (Hugo) SIGLEC16
LocusID (NCBI) 400709
Atlas_Id 73245
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49969600 and ends at 49975819 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIGLEC16   24851
Cards
Entrez_Gene (NCBI)SIGLEC16  400709  sialic acid binding Ig like lectin 16 (gene/pseudogene)
AliasesSIGLECP16; Siglec-P16
GeneCards (Weizmann)SIGLEC16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:49969600-49975819 [Contig_View]  SIGLEC16 [Vega]
TCGA cBioPortalSIGLEC16
AceView (NCBI)SIGLEC16
Genatlas (Paris)SIGLEC16
WikiGenes400709
SOURCE (Princeton)SIGLEC16
Genetics Home Reference (NIH)SIGLEC16
Genomic and cartography
GoldenPath hg38 (UCSC)SIGLEC16  -     chr19:49969600-49975819 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIGLEC16  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSIGLEC16 - 19q13.33 [CytoView hg19]  SIGLEC16 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISIGLEC16 [Mapview hg19]  SIGLEC16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301031 BC030222 BC039008 EU330985
RefSeq transcript (Entrez)NM_001348364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIGLEC16
Cluster EST : UnigeneHs.738007 [ NCBI ]
CGAP (NCI)Hs.738007
Gene ExpressionSIGLEC16 [ NCBI-GEO ]   SIGLEC16 [ EBI - ARRAY_EXPRESS ]   SIGLEC16 [ SEEK ]   SIGLEC16 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLEC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400709
GTEX Portal (Tissue expression)SIGLEC16
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMB1
Splice isoforms : SwissVarA6NMB1
PhosPhoSitePlusA6NMB1
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)I-set (PF07679)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07679    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)SIGLEC16
DMDM Disease mutations400709
Blocks (Seattle)SIGLEC16
SuperfamilyA6NMB1
Peptide AtlasA6NMB1
IPIIPI01018896   IPI00879352   
Protein Interaction databases
DIP (DOE-UCLA)A6NMB1
IntAct (EBI)A6NMB1
BioGRIDSIGLEC16
STRING (EMBL)SIGLEC16
ZODIACSIGLEC16
Ontologies - Pathways
QuickGOA6NMB1
Ontology : AmiGOplasma membrane  cell adhesion  integral component of membrane  carbohydrate binding  innate immune response  
Ontology : EGO-EBIplasma membrane  cell adhesion  integral component of membrane  carbohydrate binding  innate immune response  
NDEx NetworkSIGLEC16
Atlas of Cancer Signalling NetworkSIGLEC16
Wikipedia pathwaysSIGLEC16
Orthology - Evolution
OrthoDB400709
Phylogenetic Trees/Animal Genes : TreeFamSIGLEC16
HOVERGENA6NMB1
HOGENOMA6NMB1
Homologs : HomoloGeneSIGLEC16
Homology/Alignments : Family Browser (UCSC)SIGLEC16
Gene fusions - Rearrangements
Tumor Fusion PortalSIGLEC16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLEC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLEC16
dbVarSIGLEC16
ClinVarSIGLEC16
1000_GenomesSIGLEC16 
Exome Variant ServerSIGLEC16
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP400709
Genomic Variants (DGV)SIGLEC16 [DGVbeta]
DECIPHERSIGLEC16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIGLEC16 
Mutations
ICGC Data PortalSIGLEC16 
TCGA Data PortalSIGLEC16 
Broad Tumor PortalSIGLEC16
OASIS PortalSIGLEC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIGLEC16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIGLEC16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIGLEC16
DgiDB (Drug Gene Interaction Database)SIGLEC16
DoCM (Curated mutations)SIGLEC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIGLEC16 (select a term)
intoGenSIGLEC16
Cancer3DSIGLEC16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSIGLEC16
MedgenSIGLEC16
Genetic Testing Registry SIGLEC16
NextProtA6NMB1 [Medical]
TSGene400709
GENETestsSIGLEC16
Target ValidationSIGLEC16
Huge Navigator SIGLEC16 [HugePedia]
snp3D : Map Gene to Disease400709
BioCentury BCIQSIGLEC16
ClinGenSIGLEC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400709
Chemical/Pharm GKB GenePA134972004
Clinical trialSIGLEC16
Miscellaneous
canSAR (ICR)SIGLEC16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIGLEC16
EVEXSIGLEC16
GoPubMedSIGLEC16
iHOPSIGLEC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:12:03 CET 2017

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