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SIGLECL1 (SIGLEC family like 1)

Identity

Alias (NCBI)C19orf75
SIGLEC23P
SIGLECP7
HGNC (Hugo) SIGLECL1
HGNC Alias symbFLJ40235
HGNC Previous nameC19orf75
 SIGLEC23P
 SIGLECP7
HGNC Previous namechromosome 19 open reading frame 75
 sialic acid binding Ig-like lectin 23, pseudogene
 sialic acid binding Ig-like lectin, pseudogene 7
LocusID (NCBI) 284369
Atlas_Id 73249
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51257710 and ends at 51269328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF557 (19p13.2)::SIGLECL1 (19q13.41)ZNF714 (19p12)::SIGLECL1 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SIGLECL1   26856
Cards
Entrez_Gene (NCBI)SIGLECL1    SIGLEC family like 1
AliasesC19orf75; SIGLEC23P; SIGLECP7
GeneCards (Weizmann)SIGLECL1
Ensembl hg19 (Hinxton)ENSG00000179213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179213 [Gene_View]  ENSG00000179213 [Sequence]  chr19:51257710-51269328 [Contig_View]  SIGLECL1 [Vega]
ICGC DataPortalENSG00000179213
TCGA cBioPortalSIGLECL1
AceView (NCBI)SIGLECL1
Genatlas (Paris)SIGLECL1
SOURCE (Princeton)SIGLECL1
Genetics Home Reference (NIH)SIGLECL1
Genomic and cartography
GoldenPath hg38 (UCSC)SIGLECL1  -     chr19:51257710-51269328 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIGLECL1  -     19q13.41   [Description]    (hg19-Feb_2009)
GoldenPathSIGLECL1 - 19q13.41 [CytoView hg19]  SIGLECL1 - 19q13.41 [CytoView hg38]
ImmunoBaseENSG00000179213
Genome Data Viewer NCBISIGLECL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA454064 AK097554 AK311591 BC126357 BC126359
RefSeq transcript (Entrez)NM_001308437 NM_001385465 NM_001385466 NM_001385467 NM_173635
Consensus coding sequences : CCDS (NCBI)SIGLECL1
Gene ExpressionSIGLECL1 [ NCBI-GEO ]   SIGLECL1 [ EBI - ARRAY_EXPRESS ]   SIGLECL1 [ SEEK ]   SIGLECL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLECL1 [ Firebrowse - Broad ]
GenevisibleExpression of SIGLECL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284369
GTEX Portal (Tissue expression)SIGLECL1
Human Protein AtlasENSG00000179213-SIGLECL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X8
PhosPhoSitePlusQ8N7X8
Domains : Interpro (EBI)Ig-like_dom_sf    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SIGLECL1
SuperfamilyQ8N7X8
AlphaFold pdb e-kbQ8N7X8   
Human Protein Atlas [tissue]ENSG00000179213-SIGLECL1 [tissue]
HPRD08275
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X8
IntAct (EBI)Q8N7X8
BioGRIDSIGLECL1
STRING (EMBL)SIGLECL1
ZODIACSIGLECL1
Ontologies - Pathways
QuickGOQ8N7X8
Ontology : AmiGOprotein binding  plasma membrane  cell adhesion  integral component of membrane  sialic acid binding  
Ontology : EGO-EBIprotein binding  plasma membrane  cell adhesion  integral component of membrane  sialic acid binding  
NDEx NetworkSIGLECL1
Atlas of Cancer Signalling NetworkSIGLECL1
Wikipedia pathwaysSIGLECL1
Orthology - Evolution
OrthoDB284369
GeneTree (enSembl)ENSG00000179213
Phylogenetic Trees/Animal Genes : TreeFamSIGLECL1
Homologs : HomoloGeneSIGLECL1
Homology/Alignments : Family Browser (UCSC)SIGLECL1
Gene fusions - Rearrangements
Fusion : QuiverSIGLECL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLECL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLECL1
dbVarSIGLECL1
ClinVarSIGLECL1
MonarchSIGLECL1
1000_GenomesSIGLECL1 
Exome Variant ServerSIGLECL1
GNOMAD BrowserENSG00000179213
Varsome BrowserSIGLECL1
ACMGSIGLECL1 variants
VarityQ8N7X8
Genomic Variants (DGV)SIGLECL1 [DGVbeta]
DECIPHERSIGLECL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIGLECL1 
Mutations
ICGC Data PortalSIGLECL1 
TCGA Data PortalSIGLECL1 
Broad Tumor PortalSIGLECL1
OASIS PortalSIGLECL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIGLECL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSIGLECL1
Mutations and Diseases : HGMDSIGLECL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSIGLECL1
DgiDB (Drug Gene Interaction Database)SIGLECL1
DoCM (Curated mutations)SIGLECL1
CIViC (Clinical Interpretations of Variants in Cancer)SIGLECL1
Cancer3DSIGLECL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSIGLECL1
MedgenSIGLECL1
Genetic Testing Registry SIGLECL1
NextProtQ8N7X8 [Medical]
GENETestsSIGLECL1
Target ValidationSIGLECL1
Huge Navigator SIGLECL1 [HugePedia]
ClinGenSIGLECL1
Clinical trials, drugs, therapy
MyCancerGenomeSIGLECL1
Protein Interactions : CTDSIGLECL1
Pharm GKB GenePA165393060
PharosQ8N7X8
Clinical trialSIGLECL1
Miscellaneous
canSAR (ICR)SIGLECL1
HarmonizomeSIGLECL1
ARCHS4SIGLECL1
DataMed IndexSIGLECL1
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSIGLECL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:50:22 CET 2022

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