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SIGLECL1 (SIGLEC family like 1)

Identity

Alias_namesC19orf75
SIGLEC23P
SIGLECP7
chromosome 19 open reading frame 75
sialic acid binding Ig-like lectin 23, pseudogene
sialic acid binding Ig-like lectin, pseudogene 7
Alias_symbol (synonym)FLJ40235
Other alias
HGNC (Hugo) SIGLECL1
LocusID (NCBI) 284369
Atlas_Id 73249
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51263883 and ends at 51269328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF557 (19p13.2) / SIGLECL1 (19q13.41)ZNF714 (19p12) / SIGLECL1 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIGLECL1   26856
Cards
Entrez_Gene (NCBI)SIGLECL1  284369  SIGLEC family like 1
AliasesC19orf75; SIGLEC23P; SIGLECP7
GeneCards (Weizmann)SIGLECL1
Ensembl hg19 (Hinxton)ENSG00000179213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179213 [Gene_View]  chr19:51263883-51269328 [Contig_View]  SIGLECL1 [Vega]
ICGC DataPortalENSG00000179213
TCGA cBioPortalSIGLECL1
AceView (NCBI)SIGLECL1
Genatlas (Paris)SIGLECL1
WikiGenes284369
SOURCE (Princeton)SIGLECL1
Genetics Home Reference (NIH)SIGLECL1
Genomic and cartography
GoldenPath hg38 (UCSC)SIGLECL1  -     chr19:51263883-51269328 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIGLECL1  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblSIGLECL1 - 19q13.41 [CytoView hg19]  SIGLECL1 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBISIGLECL1 [Mapview hg19]  SIGLECL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA454064 AK097554 AK311591 BC126357 BC126359
RefSeq transcript (Entrez)NM_001308437 NM_173635
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIGLECL1
Cluster EST : UnigeneHs.381087 [ NCBI ]
CGAP (NCI)Hs.381087
Alternative Splicing GalleryENSG00000179213
Gene ExpressionSIGLECL1 [ NCBI-GEO ]   SIGLECL1 [ EBI - ARRAY_EXPRESS ]   SIGLECL1 [ SEEK ]   SIGLECL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLECL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284369
GTEX Portal (Tissue expression)SIGLECL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X8
Splice isoforms : SwissVarQ8N7X8
PhosPhoSitePlusQ8N7X8
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SIGLECL1
DMDM Disease mutations284369
Blocks (Seattle)SIGLECL1
SuperfamilyQ8N7X8
Human Protein AtlasENSG00000179213
Peptide AtlasQ8N7X8
HPRD08275
IPIIPI00167381   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X8
IntAct (EBI)Q8N7X8
FunCoupENSG00000179213
BioGRIDSIGLECL1
STRING (EMBL)SIGLECL1
ZODIACSIGLECL1
Ontologies - Pathways
QuickGOQ8N7X8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSIGLECL1
Atlas of Cancer Signalling NetworkSIGLECL1
Wikipedia pathwaysSIGLECL1
Orthology - Evolution
OrthoDB284369
GeneTree (enSembl)ENSG00000179213
Phylogenetic Trees/Animal Genes : TreeFamSIGLECL1
HOVERGENQ8N7X8
HOGENOMQ8N7X8
Homologs : HomoloGeneSIGLECL1
Homology/Alignments : Family Browser (UCSC)SIGLECL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLECL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLECL1
dbVarSIGLECL1
ClinVarSIGLECL1
1000_GenomesSIGLECL1 
Exome Variant ServerSIGLECL1
ExAC (Exome Aggregation Consortium)SIGLECL1 (select the gene name)
Genetic variants : HAPMAP284369
Genomic Variants (DGV)SIGLECL1 [DGVbeta]
DECIPHERSIGLECL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIGLECL1 
Mutations
ICGC Data PortalSIGLECL1 
TCGA Data PortalSIGLECL1 
Broad Tumor PortalSIGLECL1
OASIS PortalSIGLECL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSIGLECL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIGLECL1
DgiDB (Drug Gene Interaction Database)SIGLECL1
DoCM (Curated mutations)SIGLECL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIGLECL1 (select a term)
intoGenSIGLECL1
Cancer3DSIGLECL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSIGLECL1
Genetic Testing Registry SIGLECL1
NextProtQ8N7X8 [Medical]
TSGene284369
GENETestsSIGLECL1
Target ValidationSIGLECL1
Huge Navigator SIGLECL1 [HugePedia]
snp3D : Map Gene to Disease284369
BioCentury BCIQSIGLECL1
ClinGenSIGLECL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284369
Chemical/Pharm GKB GenePA165393060
Clinical trialSIGLECL1
Miscellaneous
canSAR (ICR)SIGLECL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIGLECL1
EVEXSIGLECL1
GoPubMedSIGLECL1
iHOPSIGLECL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:45 CEST 2017

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