Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SIK3-IT1 (SIK3 intronic transcript 1)

Identity

Alias_namesSIK3 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) SIK3-IT1
LocusID (NCBI) 100874315
Atlas_Id 73250
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 116886046 and ends at 116890721 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SIK3-IT1   41495
Cards
Entrez_Gene (NCBI)SIK3-IT1  100874315  SIK3 intronic transcript 1
Aliases
GeneCards (Weizmann)SIK3-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:116886046-116890721 [Contig_View]  SIK3-IT1 [Vega]
TCGA cBioPortalSIK3-IT1
AceView (NCBI)SIK3-IT1
Genatlas (Paris)SIK3-IT1
WikiGenes100874315
SOURCE (Princeton)SIK3-IT1
Genetics Home Reference (NIH)SIK3-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)SIK3-IT1  -     chr11:116886046-116890721 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIK3-IT1  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblSIK3-IT1 - 11q23.3 [CytoView hg19]  SIK3-IT1 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBISIK3-IT1 [Mapview hg19]  SIK3-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058022
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIK3-IT1
Cluster EST : UnigeneHs.668988 [ NCBI ]
CGAP (NCI)Hs.668988
Gene ExpressionSIK3-IT1 [ NCBI-GEO ]   SIK3-IT1 [ EBI - ARRAY_EXPRESS ]   SIK3-IT1 [ SEEK ]   SIK3-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SIK3-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874315
GTEX Portal (Tissue expression)SIK3-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SIK3-IT1
DMDM Disease mutations100874315
Blocks (Seattle)SIK3-IT1
Protein Interaction databases
BioGRIDSIK3-IT1
STRING (EMBL)SIK3-IT1
< hvef=../extdef.html#ZODIAC TARGET=ZODIAC>ZODIACSIK3-IT1
Ontologies - Pathways
Huge Navigator SIK3-IT1 [HugePedia]
snp3D : Map Gene to Disease100874315
BioCentury BCIQSIK3-IT1
ClinGenSIK3-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874315
Clinical trialSIK3-IT1
Miscellaneous
canSAR (ICR)SIK3-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIK3-IT1
EVEXSIK3-IT1
GoPubMedSIK3-IT1
iHOPSIK3-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.