Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SIMC1 (SUMO-interacting motifs containing 1)

Identity

Alias_namesC5orf25
chromosome 5 open reading frame 25
SUMO-interacting motifs containing 1
Alias_symbol (synonym)FLJ44216
OOMA1
PLEIAD
Other alias
HGNC (Hugo) SIMC1
LocusID (NCBI) 375484
Atlas_Id 73253
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175665362 and ends at 175772994 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIMC1   24779
Cards
Entrez_Gene (NCBI)SIMC1  375484  SUMO-interacting motifs containing 1
AliasesC5orf25; OOMA1; PLEIAD
GeneCards (Weizmann)SIMC1
Ensembl hg19 (Hinxton)ENSG00000170085 [Gene_View]  chr5:175665362-175772994 [Contig_View]  SIMC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170085 [Gene_View]  chr5:175665362-175772994 [Contig_View]  SIMC1 [Vega]
ICGC DataPortalENSG00000170085
TCGA cBioPortalSIMC1
AceView (NCBI)SIMC1
Genatlas (Paris)SIMC1
WikiGenes375484
SOURCE (Princeton)SIMC1
Genetics Home Reference (NIH)SIMC1
Genomic and cartography
GoldenPath hg19 (UCSC)SIMC1  -     chr5:175665362-175772994 +  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIMC1  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblSIMC1 - 5q35.2 [CytoView hg19]  SIMC1 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBISIMC1 [Mapview hg19]  SIMC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126204 AK299336 BC032390 BC037298 BC066980
RefSeq transcript (Entrez)NM_001308195 NM_001308196 NM_001308200 NM_198567
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)SIMC1
Cluster EST : UnigeneHs.719847 [ NCBI ]
CGAP (NCI)Hs.719847
Alternative Splicing GalleryENSG00000170085
Gene ExpressionSIMC1 [ NCBI-GEO ]   SIMC1 [ EBI - ARRAY_EXPRESS ]   SIMC1 [ SEEK ]   SIMC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SIMC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375484
GTEX Portal (Tissue expression)SIMC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ2
Splice isoforms : SwissVarQ8NDZ2
PhosPhoSitePlusQ8NDZ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SIMC1
DMDM Disease mutations375484
Blocks (Seattle)SIMC1
SuperfamilyQ8NDZ2
Human Protein AtlasENSG00000170085
Peptide AtlasQ8NDZ2
HPRD13486
IPIIPI00374290   IPI00787185   IPI00433422   IPI00217846   IPI00745626   IPI00909199   IPI00953364   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ2
IntAct (EBI)Q8NDZ2
FunCoupENSG00000170085
BioGRIDSIMC1
STRING (EMBL)SIMC1
ZODIACSIMC1
Ontologies - Pathways
QuickGOQ8NDZ2
Ontology : AmiGOSUMO polymer binding  
Ontology : EGO-EBISUMO polymer binding  
NDEx NetworkSIMC1
Atlas of Cancer Signalling NetworkSIMC1
Wikipedia pathwaysSIMC1
Orthology - Evolution
OrthoDB375484
GeneTree (enSembl)ENSG00000170085
Phylogenetic Trees/Animal Genes : TreeFamSIMC1
HOVERGENQ8NDZ2
HOGENOMQ8NDZ2
Homologs : HomoloGeneSIMC1
Homology/Alignments : Family Browser (UCSC)SIMC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIMC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIMC1
dbVarSIMC1
ClinVarSIMC1
1000_GenomesSIMC1 
Exome Variant ServerSIMC1
ExAC (Exome Aggregation Consortium)SIMC1 (select the gene name)
Genetic variants : HAPMAP375484
Genomic Variants (DGV)SIMC1 [DGVbeta]
DECIPHER (Syndromes)5:175665362-175772994  ENSG00000170085
CONAN: Copy Number AnalysisSIMC1 
Mutations
ICGC Data PortalSIMC1 
TCGA Data PortalSIMC1 
Broad Tumor PortalSIMC1
OASIS PortalSIMC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIMC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIMC1
BioMutasearch SIMC1
DgiDB (Drug Gene Interaction Database)SIMC1
DoCM (Curated mutations)SIMC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIMC1 (select a term)
intoGenSIMC1
Cancer3DSIMC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSIMC1
Genetic Testing Registry SIMC1
NextProtQ8NDZ2 [Medical]
TSGene375484
GENETestsSIMC1
Huge Navigator SIMC1 [HugePedia]
snp3D : Map Gene to Disease375484
BioCentury BCIQSIMC1
ClinGenSIMC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375484
Chemical/Pharm GKB GenePA144596506
Clinical trialSIMC1
Miscellaneous
canSAR (ICR)SIMC1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIMC1
EVEXSIMC1
GoPubMedSIMC1
iHOPSIMC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:12 CET 2017

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