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SINHCAF (SIN3-HDAC complex associated factor)

Identity

Alias_namesC12orf14
FAM60A
chromosome 12 open reading frame 14
family with sequence similarity 60, member A
Alias_symbol (synonym)TERA
Other aliasL4
HGNC (Hugo) SINHCAF
LocusID (NCBI) 58516
Atlas_Id 78878
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 31280586 and ends at 31326187 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SINHCAF   30702
Cards
Entrez_Gene (NCBI)SINHCAF  58516  SIN3-HDAC complex associated factor
AliasesC12orf14; FAM60A; L4; TERA
GeneCards (Weizmann)SINHCAF
Ensembl hg19 (Hinxton)ENSG00000139146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139146 [Gene_View]  chr12:31280586-31326187 [Contig_View]  SINHCAF [Vega]
ICGC DataPortalENSG00000139146
TCGA cBioPortalSINHCAF
AceView (NCBI)SINHCAF
Genatlas (Paris)SINHCAF
WikiGenes58516
SOURCE (Princeton)SINHCAF
Genetics Home Reference (NIH)SINHCAF
Genomic and cartography
GoldenPath hg38 (UCSC)SINHCAF  -     chr12:31280586-31326187 -  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SINHCAF  -     12p11.21   [Description]    (hg19-Feb_2009)
EnsemblSINHCAF - 12p11.21 [CytoView hg19]  SINHCAF - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBISINHCAF [Mapview hg19]  SINHCAF [Mapview hg38]
OMIM615027   
Gene and transcription
Genbank (Entrez)AF087885 AF212220 AK026932 AK027736 AK294457
RefSeq transcript (Entrez)NM_001135811 NM_001135812 NM_021238
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_187587
Consensus coding sequences : CCDS (NCBI)SINHCAF
Cluster EST : UnigeneHs.505154 [ NCBI ]
CGAP (NCI)Hs.505154
Alternative Splicing GalleryENSG00000139146
Gene ExpressionSINHCAF [ NCBI-GEO ]   SINHCAF [ EBI - ARRAY_EXPRESS ]   SINHCAF [ SEEK ]   SINHCAF [ MEM ]
Gene Expression Viewer (FireBrowse)SINHCAF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58516
GTEX Portal (Tissue expression)SINHCAF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP50
Splice isoforms : SwissVarQ9NP50
PhosPhoSitePlusQ9NP50
Domains : Interpro (EBI)FAM60A   
Domain families : Pfam (Sanger)FAM60A (PF15396)   
Domain families : Pfam (NCBI)pfam15396   
Conserved Domain (NCBI)SINHCAF
DMDM Disease mutations58516
Blocks (Seattle)SINHCAF
SuperfamilyQ9NP50
Human Protein AtlasENSG00000139146
Peptide AtlasQ9NP50
IPIIPI01014821   IPI00607866   IPI00639887   IPI01013733   IPI01014002   IPI01013712   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP50
IntAct (EBI)Q9NP50
FunCoupENSG00000139146
BioGRIDSINHCAF
STRING (EMBL)SINHCAF
ZODIACSINHCAF
Ontologies - Pathways
QuickGOQ9NP50
Ontology : AmiGOprotein binding  positive regulation of cell proliferation  Sin3 complex  negative regulation of cell migration  negative regulation of cell differentiation  
Ontology : EGO-EBIprotein binding  positive regulation of cell proliferation  Sin3 complex  negative regulation of cell migration  negative regulation of cell differentiation  
NDEx NetworkSINHCAF
Atlas of Cancer Signalling NetworkSINHCAF
Wikipedia pathwaysSINHCAF
Orthology - Evolution
OrthoDB58516
GeneTree (enSembl)ENSG00000139146
Phylogenetic Trees/Animal Genes : TreeFamSINHCAF
HOVERGENQ9NP50
HOGENOMQ9NP50
Homologs : HomoloGeneSINHCAF
Homology/Alignments : Family Browser (UCSC)SINHCAF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSINHCAF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SINHCAF
dbVarSINHCAF
ClinVarSINHCAF
1000_GenomesSINHCAF 
Exome Variant ServerSINHCAF
ExAC (Exome Aggregation Consortium)SINHCAF (select the gene name)
Genetic variants : HAPMAP58516
Genomic Variants (DGV)SINHCAF [DGVbeta]
DECIPHERSINHCAF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSINHCAF 
Mutations
ICGC Data PortalSINHCAF 
TCGA Data PortalSINHCAF 
Broad Tumor PortalSINHCAF
OASIS PortalSINHCAF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSINHCAF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SINHCAF
DgiDB (Drug Gene Interaction Database)SINHCAF
DoCM (Curated mutations)SINHCAF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SINHCAF (select a term)
intoGenSINHCAF
Cancer3DSINHCAF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615027   
Orphanet
MedgenSINHCAF
Genetic Testing Registry SINHCAF
NextProtQ9NP50 [Medical]
TSGene58516
GENETestsSINHCAF
Target ValidationSINHCAF
Huge Navigator SINHCAF [HugePedia]
snp3D : Map Gene to Disease58516
BioCentury BCIQSINHCAF
ClinGenSINHCAF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58516
Chemical/Pharm GKB GenePA134921007
Clinical trialSINHCAF
Miscellaneous
canSAR (ICR)SINHCAF (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSINHCAF
EVEXSINHCAF
GoPubMedSINHCAF
iHOPSINHCAF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:50 CEST 2017

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