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SIRPD (signal regulatory protein delta)

Identity

Alias_namesPTPNS1L2
protein tyrosine phosphatase, non-receptor type substrate 1-like 2
signal-regulatory protein delta
Alias_symbol (synonym)dJ576H24.4
Other alias
HGNC (Hugo) SIRPD
LocusID (NCBI) 128646
Atlas_Id 73254
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1534251 and ends at 1557697 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIRPD   16248
Cards
Entrez_Gene (NCBI)SIRPD  128646  signal regulatory protein delta
AliasesPTPNS1L2; dJ576H24.4
GeneCards (Weizmann)SIRPD
Ensembl hg19 (Hinxton)ENSG00000125900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125900 [Gene_View]  chr20:1534251-1557697 [Contig_View]  SIRPD [Vega]
ICGC DataPortalENSG00000125900
TCGA cBioPortalSIRPD
AceView (NCBI)SIRPD
Genatlas (Paris)SIRPD
WikiGenes128646
SOURCE (Princeton)SIRPD
Genetics Home Reference (NIH)SIRPD
Genomic and cartography
GoldenPath hg38 (UCSC)SIRPD  -     chr20:1534251-1557697 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SIRPD  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblSIRPD - 20p13 [CytoView hg19]  SIRPD - 20p13 [CytoView hg38]
Mapping of homologs : NCBISIRPD [Mapview hg19]  SIRPD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093083 BC033502 DA466740 DQ891297 EU176577
RefSeq transcript (Entrez)NM_178460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SIRPD
Cluster EST : UnigeneHs.729560 [ NCBI ]
CGAP (NCI)Hs.729560
Alternative Splicing GalleryENSG00000125900
Gene ExpressionSIRPD [ NCBI-GEO ]   SIRPD [ EBI - ARRAY_EXPRESS ]   SIRPD [ SEEK ]   SIRPD [ MEM ]
Gene Expression Viewer (FireBrowse)SIRPD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128646
GTEX Portal (Tissue expression)SIRPD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H106   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H106  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H106
Splice isoforms : SwissVarQ9H106
PhosPhoSitePlusQ9H106
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)SIRPD
DMDM Disease mutations128646
Blocks (Seattle)SIRPD
SuperfamilyQ9H106
Human Protein AtlasENSG00000125900
Peptide AtlasQ9H106
HPRD17931
IPIIPI00374887   IPI00640707   IPI00645122   
Protein Interaction databases
DIP (DOE-UCLA)Q9H106
IntAct (EBI)Q9H106
FunCoupENSG00000125900
BioGRIDSIRPD
STRING (EMBL)SIRPD
ZODIACSIRPD
Ontologies - Pathways
QuickGOQ9H106
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSIRPD
Atlas of Cancer Signalling NetworkSIRPD
Wikipedia pathwaysSIRPD
Orthology - Evolution
OrthoDB128646
GeneTree (enSembl)ENSG00000125900
Phylogenetic Trees/Animal Genes : TreeFamSIRPD
HOVERGENQ9H106
HOGENOMQ9H106
Homologs : HomoloGeneSIRPD
Homology/Alignments : Family Browser (UCSC)SIRPD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIRPD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIRPD
dbVarSIRPD
ClinVarSIRPD
1000_GenomesSIRPD 
Exome Variant ServerSIRPD
ExAC (Exome Aggregation Consortium)SIRPD (select the gene name)
Genetic variants : HAPMAP128646
Genomic Variants (DGV)SIRPD [DGVbeta]
DECIPHERSIRPD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSIRPD 
Mutations
ICGC Data PortalSIRPD 
TCGA Data PortalSIRPD 
Broad Tumor PortalSIRPD
OASIS PortalSIRPD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIRPD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIRPD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIRPD
DgiDB (Drug Gene Interaction Database)SIRPD
DoCM (Curated mutations)SIRPD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIRPD (select a term)
intoGenSIRPD
Cancer3DSIRPD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSIRPD
Genetic Testing Registry SIRPD
NextProtQ9H106 [Medical]
TSGene128646
GENETestsSIRPD
Target ValidationSIRPD
Huge Navigator SIRPD [HugePedia]
snp3D : Map Gene to Disease128646
BioCentury BCIQSIRPD
ClinGenSIRPD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128646
Chemical/Pharm GKB GenePA34008
Clinical trialSIRPD
Miscellaneous
canSAR (ICR)SIRPD (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIRPD
EVEXSIRPD
GoPubMedSIRPD
iHOPSIRPD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:50 CEST 2017

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