Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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SIRPG (signal-regulatory protein gamma)

Identity

Other namesCD172g
SIRP-B2
SIRPB2
SIRPgamma
bA77C3.1
HGNC (Hugo) SIRPG
LocusID (NCBI) 55423
Location 20p13
Location_base_pair Starts at 1609798 and ends at 1638425 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SIRPG   15757
Cards
Entrez_Gene (NCBI)SIRPG  55423  signal-regulatory protein gamma
GeneCards (Weizmann)SIRPG
Ensembl hg19 (Hinxton)ENSG00000089012 [Gene_View]  chr20:1609798-1638425 [Contig_View]  SIRPG [Vega]
Ensembl hg38 (Hinxton)ENSG00000089012 [Gene_View]  chr20:1609798-1638425 [Contig_View]  SIRPG [Vega]
ICGC DataPortalENSG00000089012
cBioPortalSIRPG
AceView (NCBI)SIRPG
Genatlas (Paris)SIRPG
WikiGenes55423
SOURCE (Princeton)SIRPG
Genomic and cartography
GoldenPath hg19 (UCSC)SIRPG  -     chr20:1609798-1638425 -  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIRPG  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblSIRPG - 20p13 [CytoView hg19]  SIRPG - 20p13 [CytoView hg38]
Mapping of homologs : NCBISIRPG [Mapview hg19]  SIRPG [Mapview hg38]
OMIM605466   
Gene and transcription
Genbank (Entrez)AA446468 AB042624 AK124224 AK292745 AY748247
RefSeq transcript (Entrez)NM_001039508 NM_018556 NM_080816
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)SIRPG
Cluster EST : UnigeneHs.590883 [ NCBI ]
CGAP (NCI)Hs.590883
Alternative Splicing : Fast-db (Paris)GSHG0018954
Alternative Splicing GalleryENSG00000089012
Gene ExpressionSIRPG [ NCBI-GEO ]     SIRPG [ SEEK ]   SIRPG [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1W8 (Uniprot)
NextProtQ9P1W8  [Medical]
With graphics : InterProQ9P1W8
Splice isoforms : SwissVarQ9P1W8 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    Ig_sub    Ig_V-set   
Related proteins : CluSTrQ9P1W8
Domain families : Pfam (Sanger)C1-set (PF07654)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07654    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
DMDM Disease mutations55423
Blocks (Seattle)Q9P1W8
PDB (SRS)2JJW    4I2X   
PDB (PDBSum)2JJW    4I2X   
PDB (IMB)2JJW    4I2X   
PDB (RSDB)2JJW    4I2X   
Human Protein AtlasENSG00000089012
Peptide AtlasQ9P1W8
IPIIPI00032061   IPI00783247   IPI00218601   IPI00550753   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1W8
IntAct (EBI)Q9P1W8
FunCoupENSG00000089012
BioGRIDSIRPG
IntegromeDBSIRPG
STRING (EMBL)SIRPG
Ontologies - Pathways
QuickGOQ9P1W8
Ontology : AmiGOprotein binding  plasma membrane  cell adhesion  cell-cell signaling  blood coagulation  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral component of membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Ontology : EGO-EBIprotein binding  plasma membrane  cell adhesion  cell-cell signaling  blood coagulation  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral component of membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Pathways : KEGGOsteoclast differentiation   
Protein Interaction DatabaseSIRPG
DoCM (Curated mutations)SIRPG
Wikipedia pathwaysSIRPG
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSIRPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIRPG
dbVarSIRPG
ClinVarSIRPG
1000_GenomesSIRPG 
Exome Variant ServerSIRPG
SNP (GeneSNP Utah)SIRPG
SNP : HGBaseSIRPG
Genetic variants : HAPMAPSIRPG
Genomic Variants (DGV)SIRPG [DGVbeta]
Mutations
ICGC Data PortalENSG00000089012 
Somatic Mutations in Cancer : COSMICSIRPG 
CONAN: Copy Number AnalysisSIRPG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)20:1609798-1638425
Mutations and Diseases : HGMDSIRPG
OMIM605466   
MedgenSIRPG
NextProtQ9P1W8 [Medical]
GENETestsSIRPG
Disease Genetic AssociationSIRPG
Huge Navigator SIRPG [HugePedia]  SIRPG [HugeCancerGEM]
snp3D : Map Gene to Disease55423
DGIdb (Drug Gene Interaction db)SIRPG
General knowledge
Homologs : HomoloGeneSIRPG
Homology/Alignments : Family Browser (UCSC)SIRPG
Phylogenetic Trees/Animal Genes : TreeFamSIRPG
Chemical/Protein Interactions : CTD55423
Chemical/Pharm GKB GenePA38034
Clinical trialSIRPG
Cancer Resource (Charite)ENSG00000089012
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
CoreMineSIRPG
GoPubMedSIRPG
iHOPSIRPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:17:54 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.