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SIRPG (signal-regulatory protein gamma)

Identity

Other namesCD172g
SIRP-B2
SIRPB2
SIRPgamma
bA77C3.1
HGNC (Hugo) SIRPG
LocusID (NCBI) 55423
Location 20p13
Location_base_pair Starts at 1609798 and ends at 1638425 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SIRPG   15757
Cards
Entrez_Gene (NCBI)SIRPG  55423  signal-regulatory protein gamma
GeneCards (Weizmann)SIRPG
Ensembl (Hinxton)ENSG00000089012 [Gene_View]  chr20:1609798-1638425 [Contig_View]  SIRPG [Vega]
AceView (NCBI)SIRPG
Genatlas (Paris)SIRPG
WikiGenes55423
SOURCE (Princeton)NM_001039508 NM_018556 NM_080816
Genomic and cartography
GoldenPath (UCSC)SIRPG  -  20p13   chr20:1609798-1638425 -  20p13   [Description]    (hg19-Feb_2009)
EnsemblSIRPG - 20p13 [CytoView]
Mapping of homologs : NCBISIRPG [Mapview]
OMIM605466   
Gene and transcription
Genbank (Entrez)AA446468 AB042624 AK124224 AK292745 AY748247
RefSeq transcript (Entrez)NM_001039508 NM_018556 NM_080816
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011387 NW_001838652 NW_004929416
Consensus coding sequences : CCDS (NCBI)SIRPG
Cluster EST : UnigeneHs.590883 [ NCBI ]
CGAP (NCI)Hs.590883
Alternative Splicing : Fast-db (Paris)GSHG0018954
Alternative Splicing GalleryENSG00000089012
Gene ExpressionSIRPG [ NCBI-GEO ]     SIRPG [ SEEK ]   SIRPG [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1W8 (Uniprot)
NextProtQ9P1W8  [Medical]
With graphics : InterProQ9P1W8
Splice isoforms : SwissVarQ9P1W8 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    Ig_sub    Ig_V-set   
Related proteins : CluSTrQ9P1W8
Domain families : Pfam (Sanger)C1-set (PF07654)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07654    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
DMDM Disease mutations55423
Blocks (Seattle)Q9P1W8
PDB (SRS)2JJW   
PDB (PDBSum)2JJW   
PDB (IMB)2JJW   
PDB (RSDB)2JJW   
Human Protein AtlasENSG00000089012
Peptide AtlasQ9P1W8
IPIIPI00032061   IPI00783247   IPI00218601   IPI00550753   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1W8
IntAct (EBI)Q9P1W8
FunCoupENSG00000089012
BioGRIDSIRPG
InParanoidQ9P1W8
Interologous Interaction database Q9P1W8
IntegromeDBSIRPG
STRING (EMBL)SIRPG
Ontologies - Pathways
Ontology : AmiGOprotein binding  plasma membrane  cell adhesion  cell-cell signaling  blood coagulation  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral to membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Ontology : EGO-EBIprotein binding  plasma membrane  cell adhesion  cell-cell signaling  blood coagulation  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral to membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Pathways : KEGGOsteoclast differentiation   
REACTOMESIRPG
Protein Interaction DatabaseSIRPG
Wikipedia pathwaysSIRPG
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SIRPG
SNP (GeneSNP Utah)SIRPG
SNP : HGBaseSIRPG
Genetic variants : HAPMAPSIRPG
1000_GenomesSIRPG 
ICGC programENSG00000089012 
Somatic Mutations in Cancer : COSMICSIRPG 
CONAN: Copy Number AnalysisSIRPG 
Mutations and Diseases : HGMDSIRPG
OMIM605466   
GENETestsSIRPG
Disease Genetic AssociationSIRPG
Huge Navigator SIRPG [HugePedia]  SIRPG [HugeCancerGEM]
Genomic VariantsSIRPG  SIRPG [DGVbeta]
Exome VariantSIRPG
dbVarSIRPG
ClinVarSIRPG
snp3D : Map Gene to Disease55423
General knowledge
Homologs : HomoloGeneSIRPG
Homology/Alignments : Family Browser (UCSC)SIRPG
Phylogenetic Trees/Animal Genes : TreeFamSIRPG
Chemical/Protein Interactions : CTD55423
Chemical/Pharm GKB GenePA38034
Clinical trialSIRPG
Cancer Resource (Charite)ENSG00000089012
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineSIRPG
iHOPSIRPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:58:28 CEST 2014

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