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SIRPG (signal regulatory protein gamma)

Identity

Other namesCD172g
SIRP-B2
SIRPB2
SIRPgamma
bA77C3.1
HGNC (Hugo) SIRPG
LocusID (NCBI) 55423
Atlas_Id 51138
Location 20p13
Location_base_pair Starts at 1609798 and ends at 1638425 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIRPG   15757
Cards
Entrez_Gene (NCBI)SIRPG  55423  signal regulatory protein gamma
GeneCards (Weizmann)SIRPG
Ensembl hg19 (Hinxton)ENSG00000089012 [Gene_View]  chr20:1609798-1638425 [Contig_View]  SIRPG [Vega]
Ensembl hg38 (Hinxton)ENSG00000089012 [Gene_View]  chr20:1609798-1638425 [Contig_View]  SIRPG [Vega]
ICGC DataPortalENSG00000089012
TCGA cBioPortalSIRPG
AceView (NCBI)SIRPG
Genatlas (Paris)SIRPG
WikiGenes55423
SOURCE (Princeton)SIRPG
Genomic and cartography
GoldenPath hg19 (UCSC)SIRPG  -     chr20:1609798-1638425 -  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIRPG  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblSIRPG - 20p13 [CytoView hg19]  SIRPG - 20p13 [CytoView hg38]
Mapping of homologs : NCBISIRPG [Mapview hg19]  SIRPG [Mapview hg38]
OMIM605466   
Gene and transcription
Genbank (Entrez)AA446468 AB042624 AK124224 AK292745 AY748247
RefSeq transcript (Entrez)NM_001039508 NM_018556 NM_080816
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)SIRPG
Cluster EST : UnigeneHs.590883 [ NCBI ]
CGAP (NCI)Hs.590883
Alternative Splicing GalleryENSG00000089012
Gene ExpressionSIRPG [ NCBI-GEO ]   SIRPG [ EBI - ARRAY_EXPRESS ]   SIRPG [ SEEK ]   SIRPG [ MEM ]
Gene Expression Viewer (FireBrowse)SIRPG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55423
GTEX Portal (Tissue expression)SIRPG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1W8 (Uniprot)
NextProtQ9P1W8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1W8
Splice isoforms : SwissVarQ9P1W8 (Swissvar)
PhosPhoSitePlusQ9P1W8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)C1-set (PF07654)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07654    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc1 (SM00407)  
DMDM Disease mutations55423
Blocks (Seattle)SIRPG
PDB (SRS)2JJW    4I2X   
PDB (PDBSum)2JJW    4I2X   
PDB (IMB)2JJW    4I2X   
PDB (RSDB)2JJW    4I2X   
Structural Biology KnowledgeBase2JJW    4I2X   
SCOP (Structural Classification of Proteins)2JJW    4I2X   
CATH (Classification of proteins structures)2JJW    4I2X   
SuperfamilyQ9P1W8
Human Protein AtlasENSG00000089012
Peptide AtlasQ9P1W8
IPIIPI00032061   IPI00783247   IPI00218601   IPI00550753   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1W8
IntAct (EBI)Q9P1W8
FunCoupENSG00000089012
BioGRIDSIRPG
STRING (EMBL)SIRPG
ZODIACSIRPG
Ontologies - Pathways
QuickGOQ9P1W8
Ontology : AmiGOprotein binding  intracellular  plasma membrane  cell adhesion  cell-cell signaling  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral component of membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Ontology : EGO-EBIprotein binding  intracellular  plasma membrane  cell adhesion  cell-cell signaling  positive regulation of cell proliferation  negative regulation of cell proliferation  membrane  integral component of membrane  positive regulation of cell-cell adhesion  intracellular signal transduction  positive regulation of T cell activation  leukocyte migration  
Pathways : KEGGOsteoclast differentiation   
NDEx Network
Atlas of Cancer Signalling NetworkSIRPG
Wikipedia pathwaysSIRPG
Orthology - Evolution
OrthoDB55423
GeneTree (enSembl)ENSG00000089012
Phylogenetic Trees/Animal Genes : TreeFamSIRPG
Homologs : HomoloGeneSIRPG
Homology/Alignments : Family Browser (UCSC)SIRPG
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSIRPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIRPG
dbVarSIRPG
ClinVarSIRPG
1000_GenomesSIRPG 
Exome Variant ServerSIRPG
ExAC (Exome Aggregation Consortium)SIRPG (select the gene name)
Genetic variants : HAPMAP55423
Genomic Variants (DGV)SIRPG [DGVbeta]
Mutations
ICGC Data PortalSIRPG 
TCGA Data PortalSIRPG 
Broad Tumor PortalSIRPG
OASIS PortalSIRPG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIRPG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIRPG
DgiDB (Drug Gene Interaction Database)SIRPG
DoCM (Curated mutations)SIRPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIRPG (select a term)
intoGenSIRPG
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)20:1609798-1638425  ENSG00000089012
CONAN: Copy Number AnalysisSIRPG 
Mutations and Diseases : HGMDSIRPG
OMIM605466   
MedgenSIRPG
Genetic Testing Registry SIRPG
NextProtQ9P1W8 [Medical]
TSGene55423
GENETestsSIRPG
Huge Navigator SIRPG [HugePedia]
snp3D : Map Gene to Disease55423
BioCentury BCIQSIRPG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55423
Chemical/Pharm GKB GenePA38034
Clinical trialSIRPG
Miscellaneous
canSAR (ICR)SIRPG (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIRPG
EVEXSIRPG
GoPubMedSIRPG
iHOPSIRPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 19:05:45 CEST 2016

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