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SKA1 (spindle and kinetochore associated complex subunit 1)

Identity

Alias_namesC18orf24
chromosome 18 open reading frame 24
Alias_symbol (synonym)MGC10200
Other alias
HGNC (Hugo) SKA1
LocusID (NCBI) 220134
Atlas_Id 54030
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 47901392 and ends at 47920538 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SKA1 (18q21.1) / NBAS (2p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKA1   28109
Cards
Entrez_Gene (NCBI)SKA1  220134  spindle and kinetochore associated complex subunit 1
AliasesC18orf24
GeneCards (Weizmann)SKA1
Ensembl hg19 (Hinxton)ENSG00000154839 [Gene_View]  chr18:47901392-47920538 [Contig_View]  SKA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154839 [Gene_View]  chr18:47901392-47920538 [Contig_View]  SKA1 [Vega]
ICGC DataPortalENSG00000154839
TCGA cBioPortalSKA1
AceView (NCBI)SKA1
Genatlas (Paris)SKA1
WikiGenes220134
SOURCE (Princeton)SKA1
Genetics Home Reference (NIH)SKA1
Genomic and cartography
GoldenPath hg19 (UCSC)SKA1  -     chr18:47901392-47920538 +  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SKA1  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblSKA1 - 18q21.1 [CytoView hg19]  SKA1 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBISKA1 [Mapview hg19]  SKA1 [Mapview hg38]
OMIM616673   
Gene and transcription
Genbank (Entrez)AK303464 AK313968 BC005972 BC015606 BC015706
RefSeq transcript (Entrez)NM_001039535 NM_145060
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_003315956 NW_004929410
Consensus coding sequences : CCDS (NCBI)SKA1
Cluster EST : UnigeneHs.134726 [ NCBI ]
CGAP (NCI)Hs.134726
Alternative Splicing GalleryENSG00000154839
Gene ExpressionSKA1 [ NCBI-GEO ]   SKA1 [ EBI - ARRAY_EXPRESS ]   SKA1 [ SEEK ]   SKA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SKA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220134
GTEX Portal (Tissue expression)SKA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BD8
Splice isoforms : SwissVarQ96BD8
PhosPhoSitePlusQ96BD8
Domains : Interpro (EBI)SKA1   
Domain families : Pfam (Sanger)DUF1395 (PF07160)   
Domain families : Pfam (NCBI)pfam07160   
Conserved Domain (NCBI)SKA1
DMDM Disease mutations220134
Blocks (Seattle)SKA1
PDB (SRS)4AJ5    4C9Y    4CA0   
PDB (PDBSum)4AJ5    4C9Y    4CA0   
PDB (IMB)4AJ5    4C9Y    4CA0   
PDB (RSDB)4AJ5    4C9Y    4CA0   
Structural Biology KnowledgeBase4AJ5    4C9Y    4CA0   
SCOP (Structural Classification of Proteins)4AJ5    4C9Y    4CA0   
CATH (Classification of proteins structures)4AJ5    4C9Y    4CA0   
SuperfamilyQ96BD8
Human Protein AtlasENSG00000154839
Peptide AtlasQ96BD8
HPRD12689
IPIIPI00059912   IPI00645447   
Protein Interaction databases
DIP (DOE-UCLA)Q96BD8
IntAct (EBI)Q96BD8
FunCoupENSG00000154839
BioGRIDSKA1
STRING (EMBL)SKA1
ZODIACSKA1
Ontologies - Pathways
QuickGOQ96BD8
Ontology : AmiGOcondensed chromosome outer kinetochore  protein binding  cytosol  spindle microtubule  chromosome segregation  sister chromatid cohesion  mitotic nuclear division  microtubule binding  regulation of microtubule polymerization or depolymerization  cell division  
Ontology : EGO-EBIcondensed chromosome outer kinetochore  protein binding  cytosol  spindle microtubule  chromosome segregation  sister chromatid cohesion  mitotic nuclear division  microtubule binding  regulation of microtubule polymerization or depolymerization  cell division  
NDEx NetworkSKA1
Atlas of Cancer Signalling NetworkSKA1
Wikipedia pathwaysSKA1
Orthology - Evolution
OrthoDB220134
GeneTree (enSembl)ENSG00000154839
Phylogenetic Trees/Animal Genes : TreeFamSKA1
HOVERGENQ96BD8
HOGENOMQ96BD8
Homologs : HomoloGeneSKA1
Homology/Alignments : Family Browser (UCSC)SKA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKA1
dbVarSKA1
ClinVarSKA1
1000_GenomesSKA1 
Exome Variant ServerSKA1
ExAC (Exome Aggregation Consortium)SKA1 (select the gene name)
Genetic variants : HAPMAP220134
Genomic Variants (DGV)SKA1 [DGVbeta]
DECIPHER (Syndromes)18:47901392-47920538  ENSG00000154839
CONAN: Copy Number AnalysisSKA1 
Mutations
ICGC Data PortalSKA1 
TCGA Data PortalSKA1 
Broad Tumor PortalSKA1
OASIS PortalSKA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSKA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSKA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKA1
DgiDB (Drug Gene Interaction Database)SKA1
DoCM (Curated mutations)SKA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKA1 (select a term)
intoGenSKA1
Cancer3DSKA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616673   
Orphanet
MedgenSKA1
Genetic Testing Registry SKA1
NextProtQ96BD8 [Medical]
TSGene220134
GENETestsSKA1
Huge Navigator SKA1 [HugePedia]
snp3D : Map Gene to Disease220134
BioCentury BCIQSKA1
ClinGenSKA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220134
Chemical/Pharm GKB GenePA165429102
Clinical trialSKA1
Miscellaneous
canSAR (ICR)SKA1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKA1
EVEXSKA1
GoPubMedSKA1
iHOPSKA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:23 CET 2017

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